| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4564014 | 69 (0.780) | 5 (0.060) | 5/230 | NT | 7.0% | intergenic (‑110/‑788) | vgrG‑III/glgA | type VI secretion system protein/glycogen synthase |
| ? | NC_002947 | = 4564029 | 68 (0.820) | intergenic (‑125/‑773) | vgrG‑III/glgA | type VI secretion system protein/glycogen synthase | |||||
GCCCGGCGAGCGCCTGAAAACTGAAGCGAAAGTCGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4563859‑4564014‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcccgcAATGCCAAGCATCTAGCGGGCTTGAACCTTGGTGGCGGGCCAATTTAGTTCGATATTCTCATCTTGAAGAAAGCCAGGGTGTGGTTGTTTTTCGCCGGCAAACATGATGGCGGGTAGAGCAACTCATGAAACAGTCCGACTTTC < NC_002947/4564029‑4563886 GCCCGGCGAGCGCCTGAAAACTGAAGCGAAAGTCGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAA < 1:1822699/150‑1GCCCGGCGAGCGCCTGAAAACTGAAGCGAAAGTCGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAA < 1:231178/150‑1 GGCGAGCGCCTGAAAACTGAAGCGAAAGTCGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCC > 2:2099244/1‑150 GCGAGCGCCTGAAAACTGAAGCGAAAGTCGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCG < 2:487791/150‑1 CGAGCGCCTGAAAACTGAAGCGAAAGTCGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGC < 2:104166/150‑1 GAAAGTCGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCAATGCCAAGCATCTAGCGGGC < 2:2163042/150‑1 TACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCAATGCCAAGCATCTAGCGGGCTTGAACCTTGG < 1:753895/133‑1 TACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCAATGCCAAGCATCTAGCGGGCTTGAACCTTGG > 2:753895/1‑133 CCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCAATGCCAAGCATCTAGCGG > 1:513584/1‑82 CCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCAATGCCAAGCATCTAGCGG < 2:513584/82‑1 GCCCGCAATGCCAAGCATCTAGCGGGCTTGAACCTTGGTGGCGGGCCAATTTAGTTCGATATTCTCATCTTGAAGAAAGCCAGGGTGTGGTTGTTTTTCGCCGGCAAACATGATGGCGGGTAGAGCAACTCATGAAACAGTCCGACTTTC < 2:1430016/150‑1 GCCCGGCGAGCGCCTGAAAACTGAAGCGAAAGTCGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4563859‑4564014‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcccgcAATGCCAAGCATCTAGCGGGCTTGAACCTTGGTGGCGGGCCAATTTAGTTCGATATTCTCATCTTGAAGAAAGCCAGGGTGTGGTTGTTTTTCGCCGGCAAACATGATGGCGGGTAGAGCAACTCATGAAACAGTCCGACTTTC < NC_002947/4564029‑4563886 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |