New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4564014	69 (0.780)	5 (0.060)	5/230	NT	7.0%	intergenic (‑110/‑788)	vgrG‑III/glgA	type VI secretion system protein/glycogen synthase
	?	NC_002947	= 4564029	68 (0.820)					intergenic (‑125/‑773)	vgrG‑III/glgA	type VI secretion system protein/glycogen synthase

GAAAGTCGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACAGCATGA  >  NC_002947/4563886‑4564164                                                                                                                                                |                                                                                                                                         gAAAGTCGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTgcgggc                                                                                                                                    <  2:1430016‑M2/150‑7 (MQ=255)     gTCGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGACCGCTAGATGCTTGGCATTGCGGGCTTCa                                                                                                                                <  2:216396/150‑1 (MQ=255)      tCGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGTCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGCGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCAc                                                                                                                               >  2:717012/1‑150 (MQ=255)      tCGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCAc                                                                                                                               <  2:711255/150‑1 (MQ=255)       cGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCAcc                                                                                                                              <  2:1358215/150‑1 (MQ=255)          aCTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCa                                                                                                                           <  1:2026463/150‑1 (MQ=255)              tttCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGAc                                                                                                                       >  1:1766587/1‑150 (MQ=255)                tCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACgg                                                                                                                     >  1:334082/1‑150 (MQ=255)                tCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACgg                                                                                                                     <  1:1554944/150‑1 (MQ=255)                      gTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCa                                                                                                               <  1:568716/150‑1 (MQ=255)                      gTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCa                                                                                                               >  2:2039890/1‑150 (MQ=255)                      gTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCa                                                                                                               <  2:931648/150‑1 (MQ=255)                          ctctACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAt                                                                                                           >  2:2116482/1‑150 (MQ=255)                              aCCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGTTGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTCGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAgg                                                                                                      <  1:2296156/150‑1 (MQ=255)                               cccGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTCGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGc                                                                                                     <  2:153314/150‑1 (MQ=255)                                ccGCCAGCATGTTGGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCa                                                                                                    <  1:1690313/150‑1 (MQ=255)                                 cGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAg                                                                                                   <  1:1059046/150‑1 (MQ=255)                                 cGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCACATGACGGCGATCAGGAT‑GAGGCAg                                                                                                   <  1:1538348/150‑1 (MQ=255)                                  gCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGTTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGt                                                                                                  >  1:2344124/1‑150 (MQ=255)                                  gCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGt                                                                                                  <  2:968030/150‑1 (MQ=255)                                   ccATCATGCTTGCCTGGTAAAAAACACAACCCCCTGTCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTg                                                                                                 <  2:304803/150‑1 (MQ=255)                                     atcatGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGa                                                                                               <  2:416267/150‑1 (MQ=255)                                          gTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGaa                                                                                          <  2:343828/150‑1 (MQ=255)                                          gTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGaa                                                                                          <  2:1473845/150‑1 (MQ=255)                                            ttGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAaga                                                                                        <  2:334082/150‑1 (MQ=255)                                            tagCCGGCGAAAAACAACCACCCCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGAGCAGGAT‑GAGGCAGTGGATTGAaga                                                                                        <  2:2100939/148‑1 (MQ=255)                                                cGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCaa                                                                                    <  2:767397/150‑1 (MQ=255)                                                 ggCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGTGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAAc                                                                                   >  1:2225850/1‑150 (MQ=255)                                                 ggCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAAc                                                                                   >  2:943705/1‑150 (MQ=255)                                                   cGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACtt                                                                                 <  2:1766587/150‑1 (MQ=255)                                                     aaaaaCAACCACAGACTGGCTTTCTTCAACATGAGAATATCGAACTAAATTGGCCCTCCACAAAGGTTCAAGCCGGCTAGATAGTTGGCATTGCGGGCTTCACCCCCGGACGGGGATCAGGCT‑GAGGCGGTGGATTAAAGAGCaattgaa                                                                               >  2:332283/1‑145 (MQ=255)                                                             ccACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGa                                                                                               <  1:1369103/126‑1 (MQ=255)                                                             ccACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGa                                                                                               >  2:1369103/1‑126 (MQ=255)                                                                 acCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCaa                                                                                    <  2:1797942/133‑1 (MQ=255)                                                                 acCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCaa                                                                                    >  1:1797942/1‑133 (MQ=255)                                                                    cTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGa                                                                >  1:1656370/1‑150 (MQ=255)                                                                    cTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGa                                                                <  1:1671140/150‑1 (MQ=255)                                                                                  gATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTAACAAGATGAGGGCGATCAGGGT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGAAAAGACAGGAAAGa                                                  >  1:1139948/1‑150 (MQ=255)                                                                                   aTGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGTGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGAt                                                 <  2:2225850/150‑1 (MQ=255)                                                                                   aTGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGaa                                                                                          <  1:685404/109‑1 (MQ=255)                                                                                   aTGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGaa                                                                                          >  2:685404/1‑109 (MQ=255)                                                                                        aaTATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATCGCGGGCTCCACCACATACCGGCTATCAGGAT‑GAGGTAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGtt                                            <  1:2099244/150‑1 (MQ=255)                                                                                           atCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTaa                                         <  1:943705/150‑1 (MQ=255)                                                                                           atCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTaa                                         >  2:1889430/1‑150 (MQ=255)                                                                                            tCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAat                                        >  2:428804/1‑150 (MQ=255)                                                                                              gAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAatat                                      >  1:48792/1‑150 (MQ=255)                                                                                               aaCTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAAtata                                     >  1:1752726/1‑150 (MQ=255)                                                                                                aCTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATaa                                    >  1:1209118/1‑150 (MQ=255)                                                                                                  tAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAAt                                  >  1:1724394/1‑150 (MQ=255)                                                                                                     aTTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATCCAGTCACTGCCCT‑AGGATCAACTTAAACCGTCTAACCATGCCAAGAGAGGAACGATGGGCTTAATATAAATGga                               >  1:1853650/1‑150 (MQ=255)                                                                                                             gCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGc                       <  1:428804/150‑1 (MQ=255)                                                                                                              ccaccaAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCa                      <  1:2039890/150‑1 (MQ=255)                                                                                                              ccaccaAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCa                      <  1:2116482/150‑1 (MQ=255)                                                                                                               caccaAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAg                     <  2:77673/150‑1 (MQ=255)                                                                                                                accaAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAAc                                                    >  1:886863/1‑118 (MQ=255)                                                                                                                accaAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAAc                                                    <  2:886863/118‑1 (MQ=255)                                                                                                                 ccaAGGTTCAAGCCCGCTAGATGCTTGGCATTgcgggcttgaaccttggtggcgggccaatttagttcgatattctcatcttgaagaaagccagggtgtggttgtttttcgccggcaaacatgatggcgggta                                     <  1:753895‑M2/133‑102 (MQ=255)                                                                                                                 ccaAGGTTCAAGCCCGCTAGATGCTTGGCATTgcgggcttgaaccttggtggcgggccaatttagttcgatattctcatcttgaagaaagccagggtgtggttgtttttcgccggcaaacatgatggcgggta                                     >  2:753895‑M2/1‑32 (MQ=255)                                                                                                                       ttCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAAttta             <  2:1656370/150‑2 (MQ=255)                                                                                                                       ttCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTc             <  1:1430016/150‑1 (MQ=255)                                                                                                                        tCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACgg                                                                                                                     >  1:644691/1‑46 (MQ=255)                                                                                                                        tCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACgg                                                                                                                     <  2:644691/46‑1 (MQ=255)                                                                                                                          aaccccGCTAGATGCTTGACATTGCGAGCTCCACCCCATAACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTa          <  2:1139948/147‑1 (MQ=255)                                                                                                                          aaGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACa                                                         >  2:2213274/1‑103 (MQ=255)                                                                                                                          aaGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACa                                                         <  1:2213274/103‑1 (MQ=255)                                                                                                                          aaGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTa          <  2:1724394/150‑1 (MQ=255)                                                                                                                            gCCCGCTAGATGCTTGGCATTgcgggcttgaaccttggtggcgggccaatttagttcgatattctcatcttgaagaaagccagggtgtggttgtttttcgccggcaaacatgatggcgggtagagcaactcatgaaacagtccgactttc         <  2:2163042‑M2/150‑130 (MQ=255)                                                                                                                            gCCCGCGAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGTAGATTCCGCAGGCAATTTCCTACa        <  1:717012/150‑1 (MQ=255)                                                                                                                             cccGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACAg       >  1:1548913/1‑150 (MQ=255)                                                                                                                              ccGCTAGATGCTTGGCATTgcgggcttgaaccttggtggcgggccaatttagttcgatattctcatcttgaagaaagccagg                                                                           <  2:513584‑M2/82‑64 (MQ=255)                                                                                                                              ccGCTAGATGCTTGGCATTgcgggcttgaaccttggtggcgggccaatttagttcgatattctcatcttgaagaaagccagg                                                                           >  1:513584‑M2/1‑19 (MQ=255)                                                                                                                               cGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAgg                                                                                                      <  2:1081460/53‑1 (MQ=255)                                                                                                                               cGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAgg                                                                                                      >  1:1081460/1‑53 (MQ=255)                                                                                                                                  tAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGa                                                           >  2:17378/1‑93 (MQ=255)                                                                                                                                  tAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGa                                                           <  1:17378/93‑1 (MQ=255)                                                                                                                                  tAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACAGCATGa  <  2:48792/150‑1 (MQ=255)                                                                                                                                         ttGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACa                                                         <  2:32670/88‑1 (MQ=255)                                                                                                                                         ttGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACa                                                         >  1:32670/1‑88 (MQ=255)                                                                                                                                            gCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGaa                                                                                          <  1:2271902/52‑1 (MQ=255)                                                                                                                                            gCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGaa                                                                                          >  2:2271902/1‑52 (MQ=255)                                                                                                                                                |                                                                                                                                         GAAAGTCGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGAT‑GAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACAGCATGA  >  NC_002947/4563886‑4564164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.