New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4742647 =	72 (0.810)	4 (0.050)	4/232	NT	5.2%	coding (1390/1593 nt)	PP_4197	GntR family transcriptional regulator
	?	NC_002947	4742701 =	79 (0.950)					coding (1336/1593 nt)	PP_4197	GntR family transcriptional regulator

GCGGCTACGACCGGCATCTGCGCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4742802‑4742647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtcaTCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCCGCCATTTTCCAGGTAGGCTGCCACGCCCATCTGCGTCACGCTACAGGCC  >  NC_002947/4742701‑4742849                                                                                                                                                                                                                                                                                                                   GCGGCTACGACCGGCATCTGCGCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAAATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTC                                                                                                                                                             <  2:340107/150‑1   GGCTACGACCGGCATCTGGTCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGCCCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGG                                                                                                                                                           <  2:2357128/150‑1   GGCTACGACCGGCATCTGCGCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGG                                                                                                                                                           <  2:914478/150‑1     CTACGACCGGCATCTGCGCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGT                                                                                                                                                         <  1:1274111/150‑1       ACGACCGTCATCTGCGCTCAATACGCCAGGAATATCACAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGccgg                                                                                                                                                       <  2:2309959/150‑5         GACCGGCATCTGCGCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTC                                                                                                                                                        <  1:765039/147‑1         GACCGGCATCTGCGCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTC                                                                                                                                                        >  2:765039/1‑147                        TACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGT                                                                                                                                                         <  1:1721847/131‑1                                      ATATCACAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGG                                                                                                                                                          <  2:1564077/116‑1                                      ATATCACAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGG                                                                                                                                                          >  1:1564077/1‑116                                                                                                  CCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTG                                                                                            >  1:793726/1‑118                                                                                                  CCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTG                                                                                            <  2:793726/118‑1                                                                                                           CCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCC                                                   >  1:1240091/1‑150                                                                                                                      GCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCCGCCATTTTCCA                                        <  2:1240091/150‑1                                                                                                                                                        GGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCCGCCATTTTCCAGGTAGGCTGCCACGCCCATCTGCGTCACGCTACA      <  1:78451/150‑1                                                                                                                                                        GGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTG                                                                                 >  1:279812/1‑75                                                                                                                                                        GGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTG                                                                                 <  2:279812/75‑1                                                                                                                                                            ATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCCGCCATTTTCCAGGTAGGCTGCCACGCCCATCTGCGTCACGCTACAGGCC  >  2:841081/1‑150                                                                                                                                                                                                                                                                                                                   GCGGCTACGACCGGCATCTGCGCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4742802‑4742647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtcaTCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCCGCCATTTTCCAGGTAGGCTGCCACGCCCATCTGCGTCACGCTACAGGCC  >  NC_002947/4742701‑4742849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.