New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4917157 =	93 (1.050)	7 (0.080)	6/236	NT	7.5%	coding (320/633 nt)	ccmA	cytochrome c biogenesis ABC transporter ATP‑binding protein CcmA
	?	NC_002947	4917179 =	83 (0.980)					coding (298/633 nt)	ccmA	cytochrome c biogenesis ABC transporter ATP‑binding protein CcmA

GACGGCCGGGCAGATTCTGCTGGGTGGCAAGCCCCTGGCAGAACAGCGTCATGCCTTGGCCAGCGCCCTGCTGTGGATTGGCCACGCCGCCGGCATCAAGGACTTGCTCACCGCCGAGGAGAATCTCACCTGGCTGTGCGCCCTGCACCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4917309‑4917157 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccAGGTGAGATTCTCCTCGGCGGTGAGCAAGTCCTTGATGCCGGCGGCGTGGCCAATCCACAGCAGGGCGCTGGCCAAGGCATGACGCTGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGC  >  NC_002947/4917179‑4917326                                                                                                                                                                                                                                                                                                               GACGGCCGGGCAGATTCTGCTGGGTGGCAAGCCCCTGGCAGAACAGCGTCATGCCTTGGCCAGCGCTCGAGTTTGGATTGGCCACGCCGCCGGCATCAAGGACTTGCTCACCGCCGAGGAGAATCTCACCTGGCTGTGCGCCCTGCACCA                                                                                                                                                         <  1:654882/150‑1                                                                                                                               CACCTGGCTGTGCGCCCTGCACCAGCCAGGTGAGATTCTCCTCGGCGGTGAGCAAGTCCTTGATGCCGGCGGCGTGGCCAATCAACAGCAGGGCGCTGGCCAAG                                                                         <  1:1881553/104‑1                                                                                                                               CACCTGGCTGTGCGCCCTGCACCAGCCAGGTGAGATTCTCCTCGGCGGTGAGCAAGTCCTTGATGCCGGCGGCGTGGCCAATCAACAGCAGGGCGCTGGCCAAG                                                                         >  2:1881553/1‑104                                                                                                                                ACCTGGCTGTGCGCCCTGCACCAGCCGGGTGAGATTCTCCTCGGCGGTGAGCAAGTCCTTGATGCCGGCGGCGTGGCCAATCCACAGCAGGGCGCTGGCCAAGGCATGACGCTGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCC                          >  2:794334/1‑150                                                                                                                                ACCTGGCTGTGCGCCCTGCACCAGCCAGGTGAGATTCTCCTCGGCGGTGAGCAAGTCCTTGATGCCGGCGGCGTG                                                                                                     >  1:903078/1‑75                                                                                                                                ACCTGGCTGTGCGCCCTGCACCAGCCAGGTGAGATTCTCCTCGGCGGTGAGCAAGTCCTTGATGCCGGCGGCGTG                                                                                                     <  2:903078/75‑1                                                                                                                                 CCTGGCTGTGCGCCCTGCACCAGCCAGGTGAGATTCTCCTCGGCGGTGAGCAAGTCCTTGATGCCGGCGGCGTGGCCAATCCACAGCAGGGCGCTGGCCAAGGCATGACGCTGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCG                         >  1:1216116/1‑150                                                                                                                                   TGGCTGTGCGCCCTGCACCAGCCAGGTGAGATTCTCCTCGGCGGTGAGCAAGTCCTTGATGCCGGCGGCGTGGCCAATCCACAGCAGGGCGCTGGCCAAGGCATGACGCTGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGC                       >  2:2264242/1‑150                                                                                                                                                        CCAGGTGAGATTCTCCTCGGCGGTGAGCAAGTCCTTGATGCCGGCGGCGTGGCCAATCCACAGCAGGGCGCTGGCCAAGGCATGACGCTGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGC  >  1:1303649/1‑150                                                                                                                                                        CCAGGTGAGATTCTCCTCGGCGGTGAGCAAGTCCTTGATGCCGGCGGCGTGGCCAATCCACAGCAGGGCGCTGGCCAAGGCATGACGCTGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGC  <  2:894126/150‑1                                                                                                                                                                                                                                                                                                               GACGGCCGGGCAGATTCTGCTGGGTGGCAAGCCCCTGGCAGAACAGCGTCATGCCTTGGCCAGCGCCCTGCTGTGGATTGGCCACGCCGCCGGCATCAAGGACTTGCTCACCGCCGAGGAGAATCTCACCTGGCTGTGCGCCCTGCACCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4917309‑4917157 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccAGGTGAGATTCTCCTCGGCGGTGAGCAAGTCCTTGATGCCGGCGGCGTGGCCAATCCACAGCAGGGCGCTGGCCAAGGCATGACGCTGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGC  >  NC_002947/4917179‑4917326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.