New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4928740 =	87 (0.980)	5 (0.060)	4/238	NT	5.7%	coding (1477/2244 nt)	cheA	chemotaxis histidine kinase CheA
	?	NC_002947	4928767 =	82 (0.960)					coding (1450/2244 nt)	cheA	chemotaxis histidine kinase CheA

AGCTGAAGAAAGAGATCAATCTGGAACTGGTCGGCGAAGAGACCGACCTTGACAAGAACCTCGTAGAAGCCTTGGCCGACCCGCTGGTGCACTTGGTGCGCAATGCGGTCGACCACGGTATCGAGATGCCCGACGAGCGTGAAGCGTCTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4928892‑4928740 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaTCTCGATACCGTGGTCGACCGCATTGCGCACCAAGTGCACCAGCGGGTCGGCCAAGGCTTCTACGAGGTTCTTGTCAAGGTCGGTCTCTTCGCCGACCAGTTCCAGATTGATCTCTTTCTTCAGCTGG  >  NC_002947/4928767‑4928894                                                                                                                                                                                                                                                                                           AGCTGAAGAAAGAGATCAATCTGGAACTGGTCGGCGAAGAGACCGACCTTGACAAGAACCTCGTAGAAGCCTTGGCCGACCCGCTGGTGCACTTGGTGCGCAATGCGGTCGACCACGGTATCGAGATGCCCGACGAGCGTGAAGCGTCTG                                                                                                                                     >  1:1795947/1‑150   CTGAAGAAAGAGATCAATCTGGAACTGGTCGGCGAAGAGACCGACCTTGACAAGAACCTCGTAGAAGCCTTGGCCGACCCGCTGGTGCACTTGGTGCGCAATGCGGTCGACCACGGTATCGAGATGCCCGACGAGCGTGAAGCGTCTGGC                                                                                                                                   >  2:1194831/1‑150                                                                                                                       TATCGAGATGCCCGACGAGCGTGAAGCGTCTGGCATCTCGATACCGTGGTCGACCGCATTGCGCACCAAGTGCACCAGCGGGTCG                                                                                >  1:1061897/1‑85                                                                                                                       TATCGAGATGCCCGACGAGCGTGAAGCGTCTGGCATCTCGATACCGTGGTCGACCGCATTGCGCACCAAGTGCACCAGCGGGTCG                                                                                <  2:1061897/85‑1                                                                                                                                 CCCGACGAGCGTGAAGCGTCTGGCATCTCGATACCGTGGTCGACCGCATTGCGCACCAAGTGCACCAGCGGGTCGGC                                                                              >  1:1040135/1‑77                                                                                                                                 CCCGACGAGCGTGAAGCGTCTGGCATCTCGATACCGTGGTCGACCGCATTGCGCACCAAGTGCACCAGCGGGTCGGC                                                                              <  2:1040135/77‑1                                                                                                                                  gCGACGAGCGTGAAGCGTCTGGCATCTCGATACCGTGGTCGACCGCATTGCGCACCAAGTGCACCAGCGGGTCGGCCAAGGCTTCTACGAGGTTCTTGTCAAGGTCGGTCTCTTCGCCGACCAGTTCCAGATTGATCTCTTTCTTCAGCT    >  1:85060/2‑150                                                                                                                                                         ATCTCGATACCGTGGTCGACCGCATTGCGCACCAAGTGCACCAGCGGGTCGGCCAAGGCTTCTACGAGGTTCTTGTCAAGGTCGGTCTCTTCGCCGACCAGTTCCAGATTGATCTCTTTCTTCAGCTGG  >  1:446456/1‑129                                                                                                                                                         ATCTCGATACCGTGGTCGACCGCATTGCGCACCAAGTGCACCAGCGGGTCGGCCAAGGCTTCTACGAGGTTCTTGTCAAGGTCGGTCTCTTCGCCGACCAGTTCCAGATTGATCTCTTTCTTCAGCTGG  <  2:446456/129‑1                                                                                                                                                                                                                                                                                           AGCTGAAGAAAGAGATCAATCTGGAACTGGTCGGCGAAGAGACCGACCTTGACAAGAACCTCGTAGAAGCCTTGGCCGACCCGCTGGTGCACTTGGTGCGCAATGCGGTCGACCACGGTATCGAGATGCCCGACGAGCGTGAAGCGTCTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4928892‑4928740 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaTCTCGATACCGTGGTCGACCGCATTGCGCACCAAGTGCACCAGCGGGTCGGCCAAGGCTTCTACGAGGTTCTTGTCAAGGTCGGTCTCTTCGCCGACCAGTTCCAGATTGATCTCTTTCTTCAGCTGG  >  NC_002947/4928767‑4928894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.