| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5159794 = | 79 (0.890) | 4 (0.060) | 4/184 | NT | 9.4% | intergenic (+9/+97) | PP_4542/PP_4543 | ABC transporter ATP‑binding protein/permease/hypothetical protein |
| ? | NC_002947 | 5159871 = | 18 (0.270) | intergenic (+86/+20) | PP_4542/PP_4543 | ABC transporter ATP‑binding protein/permease/hypothetical protein | |||||
AGGATTTTCTGCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5159973‑5159794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCAC > NC_002947/5159871‑5160014 AGGATTTTCTGCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGT < 2:46447/150‑1 GATTTTCTGCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGT > 1:1763356/1‑150 TTTTCTGCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGGGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAG < 2:416584/150‑1 GCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGG < 2:514373/150‑1 CTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCACGGGGGATGTTGCCCTACCGCCGGGACTGAGAGACCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGG < 2:1648738/150‑1 TGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGT < 1:106780/150‑1 TGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGG < 2:157760/149‑1 TGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGG > 1:157760/1‑149 AGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGGAGGAGCGGGTTTA > 2:736122/1‑150 AGGGGTCAAGGGGTATGCCGCAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCAGGCCTTGTCGCTGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAA < 2:417181/150‑1 AGGGGTCAAGGGGTAAGCCGAAGAGTCGCGGGGGTTGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGTACCTGTGTAGGAGCGGGTTTACCCGCGAAAA < 2:595790/150‑1 TCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCG > 1:1704507/1‑150 CCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCG > 1:639603/1‑93 CCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCG < 2:639603/93‑1 CTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCC < 2:30232/101‑1 CTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCC > 1:30232/1‑101 CGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGA > 2:1816236/1‑98 CGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGA < 1:1816236/98‑1 TGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGC < 2:2110145/90‑1 TGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGC > 1:2110145/1‑90 TGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTAC > 2:1211230/1‑86 TGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTAC < 1:1211230/86‑1 TCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGT > 2:808288/1‑75 TCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGT < 1:808288/75‑1 CCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGAT > 1:1384549/1‑75 CCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGAT < 2:1384549/75‑1 GCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCG > 2:623656/1‑115 GCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCG < 1:623656/115‑1 TAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATATCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACC > 2:956243/1‑150 GGAGCGGGTTTCCCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCC < 1:595790/150‑1 GGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCC < 2:650881/150‑1 GCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGG > 2:1962618/1‑150 GCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCC > 1:10965/1‑100 GCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCC < 2:10965/100‑1 CCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGT > 1:95610/1‑150 CCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCA > 2:1135146/1‑144 CCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCA < 1:1135146/144‑1 CCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGG < 2:437147/139‑1 CCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGG > 1:437147/1‑139 CCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCAGGTGCAGagggt > 2:68106/1‑145 GCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCA > 1:888554/1‑142 GCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCA < 2:888554/142‑1 GCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATAC < 1:74029/78‑1 GCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATAC > 2:74029/1‑78 CGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAAT < 2:1889630/150‑1 AAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCATTGACCCCTTCCCGTTCCTACATCATAGAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGC < 1:46447/150‑1 AAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCA > 1:1295625/1‑150 AGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCAC < 2:122185/150‑1 AGGATTTTCTGCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5159973‑5159794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCAC > NC_002947/5159871‑5160014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |