| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5160427 = | 101 (1.140) | 6 (0.070) | 6/230 | NT | 6.2% | coding (676/1212 nt) | PP_4543 | hypothetical protein |
| ? | NC_002947 | 5160466 = | 87 (1.050) | coding (637/1212 nt) | PP_4543 | hypothetical protein | |||||
CCGGCGCTGGACGCGCAGTTGGCGGGCCTGCCTGGGTGGATGGAACGCCTGGGCTGCCAGTTTCACTGGCAAAACCGGGGGTATCGCGACTTCCAGGACTTTCTCGACAGCCTCAGCTCGCGCAAGCGCAAGCAGATGCGCAAGGAGCGCGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5160580‑5160427‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgagc‑TGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGC > NC_002947/5160466‑5160611 CCGGCGCTGGACGCGCAGTTGGCGGGCCTGCCTGGGTGGATGGAACGCCTGGGCTGCCAGTTTCACTGGCAAAACCGGGGGTATCGCGACTTCCAGGACTTTCTCGACAGCCTCAGCTCGCGCAAGCGCAAGCAGATGCGCAAGGAGCGC > 1:437984/1‑150CCGGCGCTGGACGCGCAGTTGGCGGGCCTGCCTGGGTGGATGGAACGCCTGGGCTGCCAGTTTCACTGGCAAAACCGGGGGTATCGCGACTTCCAGGACTTTCTCGACAGCCTCAGCTCGCGCAAGCGCAAGCAGATGCGCAAGGAGCGC < 2:970859/150‑1 GGCGCTGGACGCGCAGTTGGCGGGCCTGCCTGGGTGGATGGAACGCCTGGGCTGCCAGTTTCACTGGCAAAACCGGGGGTATCGCGACTTCCAGGACTTTCTCGACAGCCTCAGCTCGCGCAAGCGCAAGCAGATGCGCAAGGAGCGCGA < 1:2059539/150‑1 GCGCTGGACGCGCAGTTGGCGGGCCTGCCTGGGTGGATGGAACGCCTGGGCTGCCAGTTTCACTGGCAAAACCGGGGGTATCGCGACTTCCAGGACTTTCTCGACAGCCTCAGCTCGCGCAAGCGCAAGCAGATGCGCAAGGAGCGCGAG < 1:1560140/150‑1 CAGGACGTTCTCGACAGCCTCAGCTCGCGCAAGCGCAAGCAGATGCGCAAGGAGCGCGAGCAGGTGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCACCCCAGGCGTTCCATCCACCCAGGCAG > 2:883346/1‑150 CTCAGCTCGCGCAAGCGCAAGCAGATGCGCAAGGAGCGCGAGC‑TGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGG > 2:1183418/1‑102 CTCAGCTCGCGCAAGCGCAAGCAGATGCGCAAGGAGCGCGAGC‑TGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCAAGTGAAACTGG < 1:1183418/102‑1 TCAGCTCGCGCAAGCGCAAGCAGATGCGCAAGGAGCGCGAGC‑AGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCA > 1:1938566/1‑150 GCTCGCGCAAGCGCAAGCAGATGCGCAAGGAGCGCGAGC‑TGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCG > 1:1560225/1‑150 CTCGCGCAAGCGCAAGCAGATGCGCAAGGAGCGCGAGC‑TGAGGCTGCCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGC > 1:2265806/1‑150 GCGAGC‑TGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAAATGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAA > 1:1718704/1‑150 CGAGC‑TGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAG < 1:1906398/150‑1 GAGC‑TGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGC < 2:1567519/150‑1 GAGC‑TGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGC > 2:824353/1‑150 GAGC‑TGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGCGCGCTCCGGAAAGC < 2:2059539/150‑1 CCGGCGCTGGACGCGCAGTTGGCGGGCCTGCCTGGGTGGATGGAACGCCTGGGCTGCCAGTTTCACTGGCAAAACCGGGGGTATCGCGACTTCCAGGACTTTCTCGACAGCCTCAGCTCGCGCAAGCGCAAGCAGATGCGCAAGGAGCGCGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5160580‑5160427‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgagc‑TGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGC > NC_002947/5160466‑5160611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |