New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5164490	101 (1.140)	8 (0.090)	8/236	NT	7.1%	coding (3438/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	= 5164525	112 (1.320)					coding (3403/3906 nt)	hrpA	ATP‑dependent helicase HrpA

CCCGGGTACACCAGGTTGCCTAGCTGCTGCTTGATGTCGTTCAGTGCCACCGCTTGGCTCAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5164338‑5164490 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcc‑‑T‑‑TG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGCTGAAGCTGTGGCATGGTCTGCAGAAACGCTTCAAGGGCAAGATCGACCTGAGCCAAGCGGTGGCACTG  <  NC_002947/5164525‑5164379                                                                                                                                                                                                                                                                                                                    CCCGGGTACACCAGGTTGCCTAGCTGCTGCTTGATGTCGTTCAGTGCCACCGCTTGGCTCAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCG                                                                                                                                                              <  1:66935/150‑1                                    GTCGTTCAGTGCCACCGCTTGGCTCAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTTCCAGGCGCTCGGCATGCTCGGCC‑‑C‑‑AGCTGCCGCGCTGGCTGAACGCAAGCGCGGC                                                                                                                       <  1:700134/150‑1                                     TCGTTCAGTGCCACCGCTTGGCTCAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCAAAACGCTCGGCATGCTCGGCC‑‑C‑‑AGCTGCCGCGCTGGCTGAACGCAAGCGCGGCA                                                                                                                      <  1:1979105/150‑1                                                           TCAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGTACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCC‑‑T‑‑TG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGC                                                                                                 >  1:1939400/1‑147                                                           TCAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGTACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCC‑‑T‑‑TG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGC                                                                                                 <  2:1939400/147‑1                                                                                           AGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCCCAG‑‑CG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGG                                                                                                                 >  2:1396951/1‑101                                                                                           AGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCC‑‑CAGCG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGG                                                                                                                 <  1:1396951/101‑1                                                                                                          TTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCC‑‑T‑‑TG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCAT                                                                                                        >  1:1071202/1‑93                                                                                                          TTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCC‑‑T‑‑TG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCAT                                                                                                        <  2:1071202/93‑1                                                                                                                                                     CGGCC‑‑T‑‑TG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGCTGAAGCTGTGGCATGGTCTGCAGAAACGCTTCAAGGGCAAGATCGACCTGAGCCAAGCGGTGGCAC    <  1:1138160/150‑1                                                                                                                                                       GCC‑‑T‑‑TG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGCTGAAGCTGTGGCATGGTCTGCAGAAACGCTTCAAGGGCAAGATCGACCTGGGCCAAACGGGGGCACTG  >  2:1266775/1‑150                                                                                                                                                       GCC‑‑T‑‑TG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGCTGAAGCTGTGGCATGGTCTGCAGAAACGCTTCAAGGGCAAGATCGACCTGAGCCAAGCGGTGGCACTG  <  2:1441394/150‑1                                                                                                                                                       GCC‑‑T‑‑TG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGC                                                                      >  1:1915087/1‑82                                                                                                                                                       GCC‑‑T‑‑TG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGC                                                                      <  2:1915087/82‑1                                                                                                                                                                                                                                                                                                                    CCCGGGTACACCAGGTTGCCTAGCTGCTGCTTGATGTCGTTCAGTGCCACCGCTTGGCTCAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5164338‑5164490 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcc‑‑T‑‑TG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGCTGAAGCTGTGGCATGGTCTGCAGAAACGCTTCAAGGGCAAGATCGACCTGAGCCAAGCGGTGGCACTG  <  NC_002947/5164525‑5164379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.