New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5237587	89 (1.010)	16 (0.200)	13/222	NT	15.8%	intergenic (+22/‑2)	PP_5700/PP_4614	hypothetical protein/hypothetical protein
	?	NC_002947	= 5237592	90 (1.130)					coding (4/387 nt)	PP_4614	hypothetical protein

TTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑AAAACGCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5237427‑5237587 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacgcccggcTCAAG‑GCCGGGCGTTTT‑GCAT‑TGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAGCTTGCCGTAGAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCGTCGACTGCCTGGTCCAGCGAACT  <  NC_002947/5237592‑5237446                                                                                                                                                                                                                                                                                                                             TTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAGGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑A                                                                                                                                                                   >  2:1613519/1‑150  TCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑AA                                                                                                                                                                  <  1:190063/150‑1     GTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑AAAAC                                                                                                                                                               >  2:401621/1‑150          CCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑AAAACGCCCG                                                                                                                                                          >  1:1405131/1‑150          CCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑AAAACGCCCG                                                                                                                                                          >  1:1428478/1‑150          CCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑AAAACGCCCG                                                                                                                                                          >  1:2251502/1‑150          CCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCAATTCTACTGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑ACAACGCCCG                                                                                                                                                          >  1:403542/1‑150            ACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑AAAACGCCCGGC                                                                                                                                                        >  1:724042/1‑150                      TTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑AAAACGCCCGGCTCAAG‑GCCGG                                                                                                                                             <  1:2013079/150‑1                                           CGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCATTGATCGGCACAAACGAAAACGCCCGGCTCAAG‑GCCGGGCGTTTT‑GCAT‑TGCCGA                                                                                                                          <  1:663515/150‑1                                                            TCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑AAAACGCCCGGCTCAAG‑GCCGGGCGTTT                                                                                                                                       >  2:458312/1‑118                                                            TCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑AAAACGCCCGGCTCAAG‑GCCGGGCGTTT                                                                                                                                       <  1:458312/118‑1                                                                                   TACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑AAAACGCCCGGCTCAAG‑GCCGGGCGTTT                                                                                                                                       <  1:1034374/95‑1                                                                                   TACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑AAAACGCCCGGCTCAAG‑GCCGGGCGTTT                                                                                                                                       >  2:1034374/1‑95                                                                                      GGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑AAAACGCCCGGCTCAAG‑GCCGGGCGTTT                                                                                                                                       >  2:177539/1‑92                                                                                      GGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑AAAACGCCCGGCTCAAG‑GCCGGGCGTTT                                                                                                                                       <  1:177539/92‑1                                                                                                     AAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCACAAACGAAAACGCCCGGCTCAAG‑GC                                                                                                                                                <  1:23360/70‑1                                                                                                     AAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCACAAACGAAAACGCCCGGCTCAAG‑GC                                                                                                                                                >  2:23360/1‑70                                                                                                                                              TCGGCA‑ATGC‑AAAACGCCCGGC‑CTTGAGCCGGGCGTTTT‑GCAT‑TGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCA                                                                           >  1:224797/1‑96                                                                                                                                              TCGGCA‑ATGC‑AAAACGCCCGGC‑CTTGAGCCGGGCGTTTT‑GCAT‑TGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCA                                                                           <  2:224797/96‑1                                                                                                                                                GGCA‑ATGC‑AAAACGCCCGGC‑CTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAGCTTGCCGTAGAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCGTCGA                     >  1:1200848/1‑150                                                                                                                                                 GCA‑ATGC‑AAAACGCCCGGC‑CTTGAGCCGGGCGTTTT‑GCAT‑TGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAGCTTGCCGTAGAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCGTCGACTG                  >  1:2252847/1‑150                                                                                                                                                 GCA‑ATGC‑AAAACGCCCGGC‑CTTGAGCCGGGCGTTTT‑GCAT‑TGCCGATCAGGCGTCCGGGTCACTCAGTTCCAA                                                                                               >  2:1478015/1‑73                                                                                                                                                 GCA‑ATGC‑AAAACGCCCGGC‑CTTGAGCCGGGCGTTTT‑GCAT‑TGCCGATCAGGCGTCCGGGTCACTCAGTTCCAA                                                                                               <  1:1478015/73‑1                                                                                                                                                        C‑AAAACGCCCGGCCTTGA‑GCCGGGCGTTTT‑GCAT‑TGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAGCTTGCCGTAGAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCGTCGACTGCCTGGT            <  2:2252847/150‑1                                                                                                                                                          AAAACGCCCGGCTCAAG‑GCCGGGCGTTTT‑GCAT‑TGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAGCTTGCCGTAGAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCGTCGACTGCCTGGTC           <  2:1670661/150‑1                                                                                                                                                             ACGCCCGGCTCAAG‑GCCGGGCGTTTT‑GCAT‑TGCCGATCAGGCGTCCGGGTTACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAGCTTGCCGTAGAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCGTCGACTGCCTGGTCCAG        >  1:1641021/1‑150                                                                                                                                                              CGCCCGGCTCAAG‑GCCGGGCGTTTT‑GCAT‑TGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAGCTTGCCGTAGAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCGTCGACTGCCTGGTCCAGC       <  1:1862621/150‑1                                                                                                                                                               GCCCGGCTCAAG‑GCCGGGCGTTTT‑GCAT‑TGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAGCTTGCCGTAGAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCGTCGACTGCCTGGTCCAGCG      >  1:401621/1‑150                                                                                                                                                                 CCGGCTCAAG‑GCCGGGCGTTTTCGTTTGTGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAGCTTGCCGTAGAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCGTCGACTGCCTGGTCCAGCG      >  2:2171067/1‑150                                                                                                                                                                   GGCTCAAG‑GCCGGGCGTTTT‑GCAT‑TGCCGATAAGGCGCCGGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAGCTTGCCGTAGAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCGTCGACTGCCTGGTCCAGCGAACT  >  2:2082953/1‑150                                                                                                                                                                                                                                                                                                                             TTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCC‑‑TGATCGGCA‑ATGC‑AAAACGCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5237427‑5237587 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacgcccggcTCAAG‑GCCGGGCGTTTT‑GCAT‑TGCCGATCAGGCGTCCGGGTCACTCAGTTCCAAGGCGCCGCGCTTGCTGCGCAGCTTGCCGTAGAAGTGCTCCAGCGCGTGATTGAGCTTGGTGGCGGCACCGTCGACTGCCTGGTCCAGCGAACT  <  NC_002947/5237592‑5237446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.