New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5245198 =	78 (0.880)	7 (0.080)	6/230	NT	8.9%	coding (557/834 nt)	hmgR	Hmg transcriptional repressor
	?	NC_002947	5245249 =	71 (0.860)					coding (608/834 nt)	hmgR	Hmg transcriptional repressor

ATGTTCATCGGCATGGAAGATCGACGTCGGCCCGACCACGGTCATCACCGCGGCGATCTGCCCCATGGCGTTGAATACCGGCGCCGACAGCGCATCCACCCCCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5245349‑5245198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgccggGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGGCGGCGCAGAGCCTGCTCACGGCCGCACGAACCGTGAGCTG  >  NC_002947/5245249‑5245396                                                                                                                                                                                                                                                                                                              ATGTTCATCGGCATGGAAGATCGACGTCGGCCCGACCACGGTCATCACCGCGGCGATCTGCCCCATGGCGTTGAATACCGGCGCCGACAGCGCATCCACCCCCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCC                                                                                                                                                        <  2:1804151/150‑1                GAAGATCGACGTCGGCCCGACCACGGTCATCACCGCGGCGATCTGCCCCATGGCGTTGAATACCGGCGCCGACAGCGCATCCACCCCCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCCG                                                                                                                                                       <  1:2115490/136‑1                GAAGATCGACGTCGGCCCGACCACGGTCATCACCGCGGCGATCTGCCCCATGGCGTTGAATACCGGCGCCGACAGCGCATCCACCCCCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCCG                                                                                                                                                       >  2:2115490/1‑136                                                                                                    CCCCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCCGGGGGT‑GATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAA                                                    >  2:345578/1‑150                                                                                                     CCCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGA                                                                                             >  2:911245/1‑109                                                                                                     CCCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGA                                                                                             <  1:911245/109‑1                                                                                                     CCCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTNCGCGNATGNCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGca                                                    >  1:1879014/1‑148                                                                                                       CGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACA                                                  >  1:1536515/1‑150                                                                                                         GCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTG                                                                                     >  1:185913/1‑113                                                                                                         GCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTG                                                                                     <  2:185913/113‑1                                                                                                                                                  ATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGGCGGCGCAGAGCCTGCTCACGGCCGCACGAACCGTG       >  1:2241760/1‑150                                                                                                                                                  ATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTG                                                                                     >  1:2081505/1‑72                                                                                                                                                  ATGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTG                                                                                     <  2:2081505/72‑1                                                                                                                                                   TGCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGGCGGCGCAGAGCCTGCTCACGGCCGCACGAACCGTGA      <  1:1107370/150‑1                                                                                                                                                    GCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGGCGGCGCAGAGCCTGCTCACGGCCGCACGAACCGTGAG     >  2:1576598/1‑150                                                                                                                                                    GCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATG                                                >  2:1986801/1‑107                                                                                                                                                    GCCGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATG                                                <  1:1986801/107‑1                                                                                                                                                      CGGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGGCGGCGCAGAGCCTGCTCACGGCCGCACGAACCGTGAGCT   <  2:1996697/150‑1                                                                                                                                                       GGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAA                                                    <  1:799696/100‑1                                                                                                                                                       GGGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAA                                                    >  2:799696/1‑100                                                                                                                                                       GGGGGTGGATGCGCTGTCGACGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGGCGGCGCAGAGCCTGCTCACGGCCGCACGAACCGTGAGCTG  >  2:996835/1‑150                                                                                                                                                                                                                                                                                                              ATGTTCATCGGCATGGAAGATCGACGTCGGCCCGACCACGGTCATCACCGCGGCGATCTGCCCCATGGCGTTGAATACCGGCGCCGACAGCGCATCCACCCCCGGCATCAGCAGGCCATGCACATGGTGCAGGCCCTTTTCGCGGATGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5245349‑5245198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgccggGGGTGGATGCGCTGTCGGCGCCGGTATTCAACGCCATGGGGCAGATCGCCGCGGTGATGACCGTGGTCGGGCCGACGTCGATCTTCCATGCCGATGAACATGGGCCGGCGGCGCAGAGCCTGCTCACGGCCGCACGAACCGTGAGCTG  >  NC_002947/5245249‑5245396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.