| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5592701 = | 89 (1.010) | 7 (0.080) | 7/236 | NT | 7.7% | coding (596/747 nt) | PP_4920 | lipoprotein |
| ? | NC_002947 | 5592728 = | 82 (0.970) | coding (623/747 nt) | PP_4920 | lipoprotein | |||||
CCTCAGCCGCGGCCGGGAAACAGTTCAGGCTTGAGTACGCCATTCAGGCGCGGGTAGGGGATCTTCAGTTCCACGTGGCCCATGGAATAGGGCGCGATGGCATAGACCTCATACTTGACCACTACCGCGCCGTACGTCAGGGC‑GACGTGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5592854‑5592701‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgCGGTAGTGGTCAAGTATGAGGTCTATGCCATCGCGCCCTATTCCATGGGCCACGTGGAACTGAAGATCCCCTACCCGCGCCTGAATGGCGTACTCAAGCCTGAACTGTTTCCCGGCCGCGGCTGAGGCTTAGCAGCCCATGCAGCAC > NC_002947/5592728‑5592874 CCTCAGCCGCGGCCGGGAAACAGTTCAGGCTTGAGTACGCCATTCAGGCGCGGGTAGGGGATCTTCAGTTCCACGTGGCCCATGGAATAGGGCGCGATGGCATAGACCTCATACTTGACCACTACCGCGCCGTACGTCAGGGC‑GACGTGC > 1:409321/1‑150 TCAGCCGCGGCCGGGAAACAGTTCAGGCTTGAGTACGCCATTCAGGCGCGGGTAGGGGATCTTCAGTTCCACGTGGCCCATGGAATAGGGCGCGATGGCATAGACCTCATACTTGACCACTATCGCGCCGTACGTCAGGGC‑GACGTGCGG < 2:918530/150‑1 TTCAGGCGCGGGTAGGGGATCTTCAGTTCCACGTGGCCCATGGAATAGGGCGCGATGGCATAGACCTCATACTTGACCACTACCGCGCCGCACGTCGCCCT‑GACGTACGGCGCGGTAGTGGTCAAGTA > 1:1597975/1‑128 TTCAGGCGCGGGTAGGGGATCTTCAGTTCCACGTGGCCCATGGAATAGGGCGCGATGGCATAGACCTCATACTTGACCACTACCGCGCCGCACGTC‑GCCCTGACGTACGGCGCGGTAGTGGTCAAGTA < 2:1597975/128‑1 TACCGCGCCGTACGTCAGGGC‑GACGTGCGGCGCGGTAGTGGTCAAGTATGAGGTCTATGCCATCGCGCCCTATTCCATGGGCCACGTGGAACTGAAGATCCCCTACCCGCGCCTGAATGGCGTACTCAAGCCTGAACTGTTTCCC > 1:1971891/1‑145 TACCGCGCCGTACGTCAGGGC‑GACGTGCGGCGCGGTAGTGGTCAAGTATGAGGTCTATGCCATCGCGCCCTATTCCATGGGCCACGTGGAACTGAAGATCCCCTACCCGCGCCTGAATGGCGTACTCAAGCCTGAACTGTTTCCC < 2:1971891/145‑1 CGTACGTCAGGGC‑GACGTGCGGCGCGGTAGTGGTCAAGTATGAGGTCTATGCCATCGCGCCCTATTCCATGGGCCACGTGGAACTGAAGATCCCCTACCCGCGCCTGAATGGCGTACTCAAGCCTGAACTGTTTCCCGGCCGCGGCTGAG > 2:1965072/1‑150 TACGTCAGGGC‑GACGTGCGGCGCGGTAGTGGTCAAGTATGAGGTCTATGCCATC > 1:1212537/1‑54 TACGTCAGGGC‑GACGTGCGGCGCGGTAGTGGTCAAGTATGAGGTCTATGCCATC < 2:1212537/54‑1 GGCGCGGTAGTGGTCAAGTATGAGGTCTATGCCATCGCGCCCTATTCCATGGGCCACGTGGAACTGAAGATCCCCTACCCGCGCCTGAATGGCGTACTCAAGCCTGAACTGTTTCCCGGCCGCGGCTGAGGCTTAGCAGCCCATGCAGCA > 1:2186553/1‑150 GCGCGGTAGTGGTCAAGTATGAGGTCTATGCCATCGCGCCCTATTCCATGGGCCACGTGGAACTGAAGATCCCCTACCCGCGCCTGAATGGCGTACTCAAGCCTGAACTGTTTCCCGGCCGCGGCTGAGGCTTAGCAGCCCATGCAGCAC > 1:1516331/1‑150 GCGCGGTAGTGGTCAAGTATGAGGTCTATGCCATCGCGCCCTATTCCATGGGCCACGTGGAACTGAAGATCCCCTACCCGCGCCTGAATGGCGTACTCAAGCCTGAACTGTTTCCCGGCCGCGGCTGAGGCTTAGCAGCCCATGCAGCAC > 1:715101/1‑150 CCTCAGCCGCGGCCGGGAAACAGTTCAGGCTTGAGTACGCCATTCAGGCGCGGGTAGGGGATCTTCAGTTCCACGTGGCCCATGGAATAGGGCGCGATGGCATAGACCTCATACTTGACCACTACCGCGCCGTACGTCAGGGC‑GACGTGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5592854‑5592701‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgCGGTAGTGGTCAAGTATGAGGTCTATGCCATCGCGCCCTATTCCATGGGCCACGTGGAACTGAAGATCCCCTACCCGCGCCTGAATGGCGTACTCAAGCCTGAACTGTTTCCCGGCCGCGGCTGAGGCTTAGCAGCCCATGCAGCAC > NC_002947/5592728‑5592874 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |