New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 564032036 (0.410)10 (0.160) 6/178 NT 24.7% intergenic (+41/‑69) PP_4950/PP_4951 hypothetical protein/EmrB/QacA family drug resistance transporter
?NC_002947 = 5640336 35 (0.550)intergenic (+57/‑53) PP_4950/PP_4951 hypothetical protein/EmrB/QacA family drug resistance transporter

GTACAGCTTGCTGGGCAGCCAGCTGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5640138‑5640320
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggccctttcgcggctaaagccgctcctacaGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGTCCATAAGTACTG  <  NC_002947/5640336‑5640201
                                                                                                                                                                                                                                                                                                                               
GTACAGCTTGCTGGGCAGCCAGCTGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTT                                                                                                                                                                           >  1:854540/1‑150
  ACAGCTTGCTGGGCAGCCAGCTGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGC                                                                                                                                                                         <  1:1650492/150‑1
     GCTTGCTGGGCAGCCAGCTGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGG                                                                                                                                                                      <  1:590346/150‑1
              GCAGCCAGCTGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGC                                                                                                                                                             >  1:2209363/1‑150
               CAGCCAGCTTGAGAACCGGCCCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGTGCAAAGGCCTGACCCTGACATTTGGACTGGACTTGCCGCCCCTTTCGCG                                                                                                                                                            >  2:101031/1‑150
                  CCAGCTGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCT                                                                                                                                                         <  1:233513/150‑1
                            GACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTC                                                                                                                                               <  2:546268/150‑1
                               CTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTG                                                                                                                                                                          <  1:1657664/120‑1
                               CTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTG                                                                                                                                                                          >  2:1657664/1‑120
                                 GACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACA                                                                                                                                          >  2:1223765/1‑150
                                                      CCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAG                                                                                                                     <  2:1840064/150‑1
                                                         tTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAG                                                                                                                  <  2:854540/149‑1
                                                         GTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAG                                                                                                                  <  1:339603/150‑1
                                                         GTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAG                                                                                                                  <  1:218779/150‑1
                                                            GACCAGTACTTATGGACAGCGCAGTGCCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGG                                                                                                               >  2:1494101/1‑150
                                                             ACCAGTACTTATGGACAGCGCAGTGCCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGC                                                                                                              <  1:1494101/150‑1
                                                                                      CCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTT                                                                                                                                                                           >  2:2312857/1‑64
                                                                                      CCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTT                                                                                                                                                                           <  1:2312857/64‑1
                                                                                                TCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAG                                                                                                                  <  1:965492/111‑1
                                                                                                TCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAG                                                                                                                  >  2:965492/1‑111
                                                                                                        CCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAG                                                                                                                     >  2:1436345/1‑100
                                                                                                        CCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAG                                                                                                                     <  1:1436345/100‑1
                                                                                                                                                     TGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTAC                      <  2:1394562/150‑1
                                                                                                                                                            CCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCA                                                                      <  2:1356488/95‑1
                                                                                                                                                            CCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCA                                                                      >  1:1356488/1‑95
                                                                                                                                                              TTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAAT                                     <  2:1116743/126‑1
                                                                                                                                                              TTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAAT                                     >  1:1116743/1‑126
                                                                                                                                                                 CGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGTCCAT          <  2:113687/150‑1
                                                                                                                                                                      CTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGG                                                                                               >  2:1315209/1‑60
                                                                                                                                                                      CTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGG                                                                                               <  1:1315209/60‑1
                                                                                                                                                                         tAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGTCCATAAGTACTG  <  1:2323263/149‑1
                                                                                                                                                                                                                                                                                                                               
GTACAGCTTGCTGGGCAGCCAGCTGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5640138‑5640320
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggccctttcgcggctaaagccgctcctacaGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGTCCATAAGTACTG  <  NC_002947/5640336‑5640201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.