New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5640320	36 (0.410)	10 (0.160)	6/178	NT	24.7%	intergenic (+41/‑69)	PP_4950/PP_4951	hypothetical protein/EmrB/QacA family drug resistance transporter
	?	NC_002947	= 5640336	35 (0.550)					intergenic (+57/‑53)	PP_4950/PP_4951	hypothetical protein/EmrB/QacA family drug resistance transporter

CAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCAT  >  NC_002947/5640201‑5640483                                                                                                                                        |                                                                                                                                                    cAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagcggcta                                                                                                                                       <  1:2323263‑M2/150‑15 (MQ=255)         aTGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcg                                                                                                                               <  2:113687‑M2/150‑23 (MQ=255)                     gTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggca                                                                                                                   <  2:1394562‑M2/150‑35 (MQ=255)                             tggAGTCATTTGCCTGGGGCACTGGTCAAAGGCTTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACaaa                                                                                                           <  2:1434562/148‑1 (MQ=255)                                    aTTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaa                                                                                                                            <  2:1116743‑M2/126‑26 (MQ=255)                                    aTTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaa                                                                                                                            >  1:1116743‑M2/1‑101 (MQ=255)                                    aTTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGAc                                                                                                    <  1:113687/150‑1 (MQ=255)                                     tttGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACg                                                                                                   >  1:166001/1‑150 (MQ=255)                                          ccGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGACTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGAc                                                                                                              >  2:1359602/1‑134 (MQ=255)                                          ccGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGACTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGAc                                                                                                              <  1:1359602/134‑1 (MQ=255)                                                           ggCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCt                                                                             <  1:1394562/150‑1 (MQ=255)                                                              ctgaccctgacATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTCAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGa                                                                          >  1:1420715/1‑150 (MQ=255)                                                                     tgacATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagg                                                                                                                          >  1:1356488‑M2/1‑68 (MQ=255)                                                                     tgacATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagg                                                                                                                          <  2:1356488‑M2/95‑28 (MQ=255)                                                                            gtgACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGGGCAAGCGCCGGCACTGACAAACGAGGACGTCCTGCCCGAACGCACCCCCCTGGACCCCCTCAcccccc                                                            >  2:455487/1‑150 (MQ=38)                                                                                        gCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCtt                                                <  2:166001/150‑1 (MQ=255)                                                                                        gCCGGCCCTTTCGCGGCTAAAGCCGATCCTACAAGGAACGCGTACCCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCtt                                                <  2:2072242/150‑1 (MQ=255)                                                                                          cGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGAt                                                     >  2:1523932/1‑143 (MQ=255)                                                                                          cGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGAt                                                     <  1:1523932/143‑1 (MQ=255)                                                                                           ggCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGAcccc                                                                      >  1:107271/1‑125 (MQ=255)                                                                                           ggCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGAcccc                                                                      <  2:107271/125‑1 (MQ=255)                                                                                              ccTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttag                                                                                                                                    <  1:1315209‑M2/60‑18 (MQ=255)                                                                                              ccTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttag                                                                                                                                    >  2:1315209‑M2/1‑43 (MQ=255)                                                                                               cTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGAcc                                                                        <  1:1032455/119‑1 (MQ=255)                                                                                               cTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGAcc                                                                        >  2:1032455/1‑119 (MQ=255)                                                                                               cTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGggtggt                                         >  1:1024978/1‑150 (MQ=255)                                                                                                   cgcgGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGcc                                     >  2:718450/1‑150 (MQ=255)                                                                                                    gcgGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCa                                    <  2:1024978/150‑1 (MQ=255)                                                                                                     cgGCTACAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCAt                                   >  2:270180/1‑150 (MQ=255)                                                                                                     cgGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGCCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCCCCGCCCGCTGGATCCCTTGGGTGGTGGCCAt                                   >  2:270037/1‑150 (MQ=255)                                                                                                        cTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGc                                >  2:1828240/1‑150 (MQ=255)                                                                                                          aaaGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTg                                               >  2:1874397/1‑133 (MQ=255)                                                                                                          aaaGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTg                                               <  1:1874397/133‑1 (MQ=255)                                                                                                          aaaGCCGCTCCTACAAGAAACGCGTAACCCCTGTAAGAACGGCTTTAGCCGCGAAAGAGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTAGTGGCCATCTCct                              >  2:860864/1‑150 (MQ=255)                                                                                                            aGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCcttc                            <  2:1420715/150‑1 (MQ=255)                                                                                                             gCCGCTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatgactcgacccggcactgcgctgtccataagtactggt                           <  1:1494101‑M2/150‑123 (MQ=255)                                                                                                             gCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCcttct                           >  1:1824547/1‑150 (MQ=255)                                                                                                              ccGCTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatgactcgacccggcactgcgctgtccataagtactggtc                          >  2:1494101‑M2/1‑27 (MQ=255)                                                                                                              ccGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGggtggt                                         <  2:1223348/135‑1 (MQ=255)                                                                                                              ccGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGggtggt                                         >  1:1223348/1‑135 (MQ=255)                                                                                                                gCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCa                        >  1:1058062/1‑150 (MQ=255)                                                                                                                gCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCa                        >  1:1038718/1‑150 (MQ=255)                                                                                                                 cTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcacgtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatgactcgacccggtactgcgctgtccataagtactggtcgac                       <  1:218779‑M2/150‑127 (MQ=255)                                                                                                                 cTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatgactcgacccggtactgcgctgtccataagtactggtcgac                       <  1:339603‑M2/150‑127 (MQ=255)                                                                                                                 cTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatgactcgacccggtactgcgctgtccataagtactggtcgaa                       <  2:854540‑M2/150‑127 (MQ=255)                                                                                                                 cTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatga                                                              >  2:965492‑M2/1‑24 (MQ=255)                                                                                                                 cTCCTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatga                                                              <  1:965492‑M2/111‑88 (MQ=255)                                                                                                                 cTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCAt                       >  2:178082/1‑150 (MQ=255)                                                                                                                    cTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgggcaaatgactcgacccggtactgcgctgtccataagtactggtcgacagg                    <  2:1840064‑M2/150‑130 (MQ=255)                                                                                                                    cTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgg                                                                      >  2:1436345‑M2/1‑21 (MQ=255)                                                                                                                    cTACAAGGAACGCGTAACCCCtgtaggagcggctttagccgcgaaagggccggcaagtccagtcacaatgtcagggtcaggcctttgaccagtgccccgg                                                                      <  1:1436345‑M2/100‑80 (MQ=255)                                                                                                                         aGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCGCGAGCGCACCCCGCTGGGCCCCGTCACCGCCCGCGGGATCCCTTGGGTGGTGGCGATGGCTTTCTTCATGCAGTccc               >  1:1930471/1‑150 (MQ=255)                                                                                                                         aGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTccc               >  2:59710/1‑150 (MQ=255)                                                                                                                           gAACGGTTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCGCCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCtt             <  2:2209363/150‑2 (MQ=255)                                                                                                                           gAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTg             >  2:1092331/1‑150 (MQ=255)                                                                                                                               gcgTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACg         >  1:204664/1‑150 (MQ=255)                                                                                                                                    aCCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGggt                                            >  2:1929547/1‑110 (MQ=255)                                                                                                                                    aCCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGggt                                            <  1:1929547/110‑1 (MQ=255)                                                                                                                                     ccccTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGgtggtg                                        <  1:1107916/113‑1 (MQ=255)                                                                                                                                     ccccTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGgtggtg                                        >  2:1107916/1‑113 (MQ=255)                                                                                                                                      cccTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCAt  >  1:767994/1‑150 (MQ=255)                                                                                                                                        |                                                                                                                                                    CAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCAT  >  NC_002947/5640201‑5640483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.