New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5653264 =	101 (1.140)	10 (0.120)	8/234	NT	10.0%	coding (99/252 nt)	PP_4962	hypothetical protein
	?	NC_002947	5653301 =	84 (1.000)					coding (62/252 nt)	PP_4962	hypothetical protein

GTCGAGGGCAAGGTCCTGCCAGCTGTGGCAATTCTGGAAGAGCGGGCCAAGGCCTGATGACGTCGGCGCTTGGCAAAGGGAGTGCCCTGGTGGTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5653418‑5653264 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCACCGGTAGA  >  NC_002947/5653301‑5653448                                                                                                                                                                                                                                                                                                                 GTCGAGGGCAAGGTCCTGCCAGCTGTGGCAATTCTGGAAGAGCGGGCCAAGGCCTGATGACGTCGGCGCTTGGCAAAGGGAGTGCCCTGGTGGTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCC                                                                                                                                                           >  2:115744/1‑150                                                                                                                         CCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTC                                   >  2:104173/1‑150                                                                                                                          CGGTCTGCTTAGCGCTTGCGCAGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCG                                  >  1:1601492/1‑150                                                                                                                          CGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCG                                  >  1:279261/1‑150                                                                                                                           GGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAAT                                                                                                                                    <  1:1737710/51‑1                                                                                                                           GGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAAT                                                                                                                                    >  2:1737710/1‑51                                                                                                                                  TGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCT                                                    <  1:1756841/124‑1                                                                                                                                  TGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCT                                                    >  2:1756841/1‑124                                                                                                                                  TGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGG                                                                                                                                        >  2:2153609/1‑40                                                                                                                                  TGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGG                                                                                                                                        <  1:2153609/40‑1                                                                                                                                           GCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGC                 <  1:104173/150‑1                                                                                                                                                      CCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCACCGG      >  1:1145857/1‑150                                                                                                                                                        GGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCACCGGTA    <  2:989597/150‑1                                                                                                                                                        GGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCACCGGTA    <  2:1894717/150‑1                                                                                                                                                        GGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCACCGGTA    <  1:848458/150‑1                                                                                                                                                         GCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCACCGGTAG   >  1:1213818/1‑150                                                                                                                                                         GCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCCACGAACTCGAGGAAGGCGCCACCACCGGTAG   >  1:704222/1‑150                                                                                                                                                          CCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCACCGGTAGA  <  2:279261/150‑1                                                                                                                                                          CCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCAAAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCACCGGTAGA  >  1:12483/1‑150                                                                                                                                                                                                                                                                                                                 GTCGAGGGCAAGGTCCTGCCAGCTGTGGCAATTCTGGAAGAGCGGGCCAAGGCCTGATGACGTCGGCGCTTGGCAAAGGGAGTGCCCTGGTGGTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5653418‑5653264 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCGACGAACTCGAGGAAGGCGCCACCACCGGTAGA  >  NC_002947/5653301‑5653448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.