New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5731921 =	77 (0.870)	6 (0.070)	5/232	NT	7.3%	coding (691/1206 nt)	hutI	imidazolonepropionase
	?	NC_002947	5731965 =	80 (0.960)					coding (647/1206 nt)	hutI	imidazolonepropionase

GTCGGGCCGACGACTACATCGCGCACATCTGTGACGAGATGTTGCCGGCCTTGGCCGGCGAAGGCCTGGTGGATGCGGTGGATGCCTTCTGCGAACACCTCGCGTTCTCGCCGGCCCAGGTCGAGCGGCTGTTCATCAAGGCGCGCGAACTGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5732076‑5731921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggccGGCGAGAACGCGAGGTGTTCGCAGAAGGCATCCACCGCATCCACCAGGCCTTCGCCGGCCAAGGCCGGCAACATCTCGTCACAGATGTGCGCGATGTAGTCGTCGGCCCGACCCGCGTACTCCGGGGGCAAAGCGTGCGCCGCCAGGC  >  NC_002947/5731965‑5732112                                                                                                                                                                                                                                                                                                                  GTCGGGCCGACGACTACATCGCGCACATCTGTGACGAGATGTTGCCGGCCTTGGCCGGCGAAGGCCTGGTGGATGCGGTGGATGCCTTCTGCGAACACCTCGCGTTCTCGCCGGCCCAGGTCGAGCGGCTGTTCATCAAGGCGCGCGAAC                                                                                                                                                            >  2:1976509/1‑150  TCGGGCCGACGACTACATCGCGCACATCTGTGACGAGATGTTGCCGGCCTTGGCCGGCGAAGGCCTGGTGGATGCGGTGGATGCCTTCTGCGAACACCTCGCGTTCTCGCCGGCCCAGGTCGAGCGGCTGTTCATCAAGGCGCGCGAACT                                                                                                                                                           <  1:2358078/150‑1    GGGCCGACGACTACATCGCGCACATCTGTGACGAGATGTTGCCGGCCTTGGCCGGCGAAGGCCTGGTGGATGCGGTGGATGCCTTCTGCGAACACCTCGCGTTCTCGCCGGCCCAGGTCGAGCGGCTGTTCATCAAGGCGCGCGAACTGG                                                                                                                                                         <  2:135841/150‑1      GCCGACGACTACATCGCGCACATCTGTGACGAGATGTTGCCGGCCTTGGCCGGCGAAGGCCTGGTGGATGCGGTGGATGCCTTCTGCGAACACCTCGCGTTCTCGCCGGCCCAGGTCGAGCGGCTGTTCATCAAGGCGCGCGAACTGGGC                                                                                                                                                       <  2:2215383/150‑1          ACGACTACATCGCGCACATCTGTGACGAGATGTTGCCGGCCTTGGCCGGCGAAGGCCTGGTGGATGCGGTGGATGCCTTCTGCGAACACCTCGCGTTCTCGCCGGCCCAGGTCGAGCGGCTGTTCATCAAGGCGCGCGAACTG                                                                                                                                                          >  2:2002535/1‑143          ACGACTACATCGCGCACATCTGTGACGAGATGTTGCCGGCCTTGGCCGGCGAAGGCCTGGTGGATGCGGTGGATGCCTTCTGCGAACACCTCGCGTTCTCGCCGGCCCAGGTCGAGCGGCTGTTCATCAAGGCGCGCGAACTG                                                                                                                                                          <  1:2002535/143‑1                                                                                                               CCGGCCCAGGTCGAGCGGCTGTTCATCAAGGCGCGCGAACTGGGCCGGCGAGAACGCGAGGTGTTCGCAGAAGGCATCCACCGCATCCACCAGGCCTTCGCCGGCCAAGGCCGGCAACATCTCGTCACAGATGTGCGCGATGTAGTCGTC                                              >  1:211538/1‑150                                                                                                                     CAGGTCGAGCGGCTGTTCATCAAGGCGCGCGAACTGGGCCGGCGAGAACGCGAGGTGTTCGCAGAAGGCATCCACCGCA                                                                                                               >  1:1581984/1‑79                                                                                                                     CAGGTCGAGCGGCTGTTCATCAAGGCGCGCGAACTGGGCCGGCGAGAACGCGAGGTGTTCGCAGAAGGCATCCACCGCA                                                                                                               <  2:1581984/79‑1                                                                                                                      AGGTCGAGCGGCTGTTCATCAAGGCGCGCGAACTGGGCCTGCGAGCACGCGAGGTGTTCGCAGAAGGCATCCACCGCATCCACCAGGCCTTCGCCGGCCAAGGCCGGCAACATCTCGTCACAGATGTGCGCGATGTAGTCGTCGGCCCGt                                       >  2:88560/1‑149                                                                                                                      AGGTCGAGCGGCTGTTCATCAAGGCGCGCGAACTGGGCCGGCGAGAACGCGAGGTGTTCGCAGAAGGCATCCACCGCATCCACCAGGCCTTCGCCGGCCAAGGCCGGCAACATCTCGTCACAGATGTGCGCGAT                                                       >  1:2235979/1‑134                                                                                                                      AGGTCGAGCGGCTGTTCATCAAGGCGCGCGAACTGGGCCGGCGAGAACGCGAGGTGTTCGCAGAAGGCATCCACCGCATCCACCAGGCCTTCGCCGGCCAAGGCCGGCAACATCTCGTCACAGATGTGCGCGAT                                                       <  2:2235979/134‑1                                                                                                                                                      CTGGGCCGGCGAGAACGCGAGGTGTTCGCAGAAGGCATCCACCGCATCCACCAGGCCTTCGCCGGCCAAGGCCGGCAACATCTCGTCACAGATGTGCGCGATGTAGTCGTCGGCCCGACCCGCGTACTCCGGGGGCAAAGCGTGCGCCGC       >  1:1068255/1‑150                                                                                                                                                       TGGGCCGGCGAGAACGCGAGGTGTTCGCAGAAGGCATCCACCGCATCCACCAGGCCTTCGCCGGCCAAGGCCGGCCAGATCTCCTCACAGCGGTGCTCGACGTAGTCGTCGGCCCGACCCGCGTACTCCGGGGGCAAAGCGTGCGCCGCC      <  1:2101942/150‑1                                                                                                                                                         GGCCGGCGAGAACGCGAGGTGTTCGCAGAAGGCATCCACCGCATCCACCAGGCCTTCGCCGGCCAAGGCCGGCAACATCTCGTCACAGATGTGCGCGATGTAGTCGTCGGCCCGACCCGCGTACTCCGGGGGCAAAGCGTGCGCCGCCgg    <  2:2263256/150‑3                                                                                                                                                         GGCCGGCGAGAACGCGAGGTGTTCGCAGAAGGCATCCACCGCATCCACCAGGCCTTCGCCGGCCAAGGCCGGCAACATCTCGTCACAGATGTGCGCGATGTAGTCGTCGGCCCGACCCGCGTACTCCGGGGGCAAAGCGTGCGCCGCCAG    <  2:1796636/150‑1                                                                                                                                                         GGCCGGCGAGAACGCGAGGTGTTCGCAGAAGGCATCCACCGCATCCACCAGGCCTTCGCCGGCCAAGGCCGGCAACATCTCGTCACAGATGTGCGCGATGTAGTCGTCGGCCCGACCCGCGTACTCCGGGGGCAAAGCGTGCGCCGCCAG    >  1:1286486/1‑150                                                                                                                                                         GGCCGGCGAGAACGCGAGGTGTTCGCAGAAGGCATCCACCGCATCCACCAGGCCTTCGCCGGCCAAGGCCGGCAACATCTCGTCACAGATGTGCGCGATGTAGTCGTCGGCCCGACCCGCGTACTCCGGGGGCAAAGCGTGCGCCGCCAG    <  2:2224318/150‑1                                                                                                                                                           CCGGCGAGAACGCGAGGTGTTCGCAGAAGGCATCCACCGCATCCACCAGGCCTTCGCCGGCCAAGGCCGGCAACATCTCGTCACAGATGTGCGCGATGTAGTCGTCGGCCCGACCCGCGTACTCCGGGGGCAAAGCGTGCGCCGCCAGGC  >  1:1465082/1‑150                                                                                                                                                           CCGGCGAGAACGCGAGGTGTTCGCAGAAGGCATCCACCGCATCCACCAGGCCTTCGCCGGCCAAGGCCGGCAACATCTCGTCACAGATGTGCGCGATGTAGTCGTCGGCCCGACCCGCGTACTCCGGGGGCAAAGCGTGCGCCGCCAGGC  >  1:142518/1‑150                                                                                                                                                                                                                                                                                                                  GTCGGGCCGACGACTACATCGCGCACATCTGTGACGAGATGTTGCCGGCCTTGGCCGGCGAAGGCCTGGTGGATGCGGTGGATGCCTTCTGCGAACACCTCGCGTTCTCGCCGGCCCAGGTCGAGCGGCTGTTCATCAAGGCGCGCGAACTGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5732076‑5731921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggccGGCGAGAACGCGAGGTGTTCGCAGAAGGCATCCACCGCATCCACCAGGCCTTCGCCGGCCAAGGCCGGCAACATCTCGTCACAGATGTGCGCGATGTAGTCGTCGGCCCGACCCGCGTACTCCGGGGGCAAAGCGTGCGCCGCCAGGC  >  NC_002947/5731965‑5732112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.