New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5822301	76 (0.860)	9 (0.110)	8/234	NT	10.9%	coding (205/435 nt)	PP_5099	hypothetical protein
	?	NC_002947	= 5822311	75 (0.890)					coding (215/435 nt)	PP_5099	hypothetical protein

TTGGCTGCCGATGCCGCACGCCCCGAGCGCAAGGAGGTATTTGGCGACGTGACGGTGCACTACAGCGCATTCACCTCGAGCATGCTCACACCCAAGGTGGCCGCGGCCACCGGCCTGGTGCGCAGCAAGAACCAGGGCGTGCTCAACATTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5822148‑5822301 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccgGCCTTGAGCACGGCAATGTTGAGCACGCCCTGGTTCTTGCTGCGCACCAGGCCGGTGGCCGCGGCCACCTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAATACCTCCTTGCGCTCGGGG  <  NC_002947/5822311‑5822168                                                                                                                                                                                                                                                                                                            TTGGCTGCCGATGCCGCACGCCCCGAGCGCAAGGAGGTATTTGGCGACGTGACGGTGCACTACAGCGCATTCACCTCGAGCATGCTCACACCCAAGGTGGCCGCGGCCACCGGCCTGGTGCGCAGCAAGAACCAGGGCGTGCTCAACATT                                                                                                                                                      <  2:2312627/150‑1    gtTGCCGTTGCCGCACGCCCGGTGCGGAAGGAGGTAGTTGGCGACGTGACGGTGCACTACAGCGCATTCACCTCGAGCATGGTCACACCCAAGGTGGCCGCGGCCACCGGCCGGGTGCGCAGCAAGAACCAGGGCGTGCTCAACATTGCC                                                                                                                                                   <  2:976890/148‑1    GCTGCCGATGCCGCACGCCCCGAGCGCAAGGAGGTATTTGGCGACGTGACGGTGCACTACAGCGCATTCACCTCGAGCATGCTCACACCCAAGGTGGCCGCGGCCACCGGCCTGGTGCGCAGCAAGAACCAGGGCGTGCTCAACATTGCC                                                                                                                                                   <  2:1975177/150‑1    GCTGCCGATGCCGCACGCCCCGAGCGCAAGGAGGTATTTGGCGACGTGACGGTGCACTACAGCGCATTCACCTCGAGCATGCTCACACCCAAGGTGGCCGCGGCCACCGGCCTGGTGCGCAGCAAGAACCAGGGCGTGCTCAACATTGCC                                                                                                                                                   <  2:185905/150‑1    GCTGCCGATGCCGCACGCCCCGAGCGCAAGGAGGTATTTGGCGACGTGACGGTGCACTACAGCGCATTCACCTCGAGCATGCTCACACCCAAGGTGGCCGCGGCCACCGGCCTGGTGCGCAGCAAGAACCAGGGCGTGCTCAACATTGCC                                                                                                                                                   <  2:1628075/150‑1        CCGATGCCGCACGCCCCAAGCGCAAGGAGGTATTTGGCGACGTGACGGTGCACTAGAGCGCATTCACCTTGAGCATGCTCACACCCAAGGTGGCCGGGGCCACCGGCCTGGTGCGCAGCAAGAACTGGGGCGTGCTTAACATTGCCctgc                                                                                                                                               >  2:958592/1‑146                                  GAGGTATTTGGCGACGTGACGGTGCACTACAGCGCATTCACCTCGAGCATGCTCACACCCAAGGTGGCCGCGGCCACCGGCCTGGTGCGCAGCAAGAACCAGGGCGTGCTCAACATTGCC                                                                                                                                                   >  2:167805/1‑120                                  GAGGTATTTGGCGACGTGACGGTGCACTACAGCGCATTCACCTCGAGCATGCTCACACCCAAGGTGGCCGCGGCCACCGGCCTGGTGCGCAGCAAGAACCAGGGCGTGCTCAACATTGCC                                                                                                                                                   <  1:167805/120‑1                                                                                      TCACACCCAAGGTGGCCGCGGCCACCGGCCTGGTGCGCAGCAAGAACCAGGGCGTGCTCAACATTGCCGGCCTTGAGCACGGCAATGTTGA                                                                                                                            <  1:707580/91‑1                                                                                      TCACACCCAAGGTGGCCGCGGCCACCGGCCTGGTGCGCAGCAAGAACCAGGGCGTGCTCAACATTGCCGGCCTTGAGCACGGCAATGTTGA                                                                                                                            >  2:707580/1‑91                                                                                              AAGGTGGCCGCGGCCACCGGCCTGGTGCGCAGCAAGAACCAGGGCGTGCTCAACATTGCC                                                                                                                                                   <  1:755728/60‑1                                                                                              AAGGTGGCCGCGGCCACCGGCCTGGTGCGCAGCAAGAACCAGGGCGTGCTCAACATTGCC                                                                                                                                                   >  2:755728/1‑60                                                                                                                            AGCAAGAACCAGGGCGTGCTCAACATTGCCGGCCTTGAGCACGGCAA                                                                                                                                  <  2:1327318/47‑1                                                                                                                            AGCAAGAACCAGGGCGTGCTCAACATTGCCGGCCTTGAGCACGGCAA                                                                                                                                  >  1:1327318/1‑47                                                                                                                             GCAAGAACCAGGGCGTGCTCAACATTGCCGGCCTTGAGCACGGCAAT                                                                                                                                 <  1:513947/47‑1                                                                                                                             GCAAGAACCAGGGCGTGCTCAACATTGCCGGCCTTGAGCACGGCAAT                                                                                                                                 >  2:513947/1‑47                                                                                                                                       GGGCGTGCTCAACATTGCCGGCCTTGAGCACGGCAATGTTGAGCACGCCCTGG                                                                                                                 <  1:557890/53‑1                                                                                                                                       GGGCGTGCTCAACATTGCCGGCCTTGAGCACGGCAATGTTGAGCACGCCCTGG                                                                                                                 >  2:557890/1‑53                                                                                                                                               TCAACATTGCCGTGCTCGAGGCCGGCAATGTTGAGCACGCCCTGGTTCTTGCTGCGCACCAGGCCGGTGGCCGCGGCCACCTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAATACCTCCTTGCGC        >  2:1093269/1‑150                                                                                                                                                     TTGCCGGCCTTGAGCACGGCAATGTTGAGCACGCCCTGGTTCTTGCTGCGCACCAGGCCGGTGGCCGCGGCCACCTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAATACCTCCTTGCGCTCGGGG  <  2:459757/150‑1                                                                                                                                                     TTGCCGGCCTTGAGCACGGCAATGTTGAGCACGCCCTGGTTCTTGCTGCGCACCAGGCCGGTGGCCGCGGCCACCTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAATACCTCCTTGCGCTCGGG   <  1:1550730/149‑1                                                                                                                                                     TTGCCGGCCTTGAGCACGGCAATGTTGAGCACGCCCTGGTTCTTGCTGCGCACCAGGCCGGTGGCCGCGGCCACCTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAATACCTCCTTGCGCTCGGG   >  2:1550730/1‑149                                                                                                                                                          GGCCTTGAGCACGGCAATGTTGAGCACGCCCTGGTTCTTGCTGCGCACCAGGCCGGTGGCCGCGGCCACCTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAA                     >  2:418162/1‑126                                                                                                                                                          GGCCTTGAGCACGGCAATGTTGAGCACGCCCTGGTTCTTGCTGCGCACCAGGCCGGTGGCCGCGGCCACCTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAA                     <  1:418162/126‑1                                                                                                                                                                                                                                                                                                            TTGGCTGCCGATGCCGCACGCCCCGAGCGCAAGGAGGTATTTGGCGACGTGACGGTGCACTACAGCGCATTCACCTCGAGCATGCTCACACCCAAGGTGGCCGCGGCCACCGGCCTGGTGCGCAGCAAGAACCAGGGCGTGCTCAACATTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5822148‑5822301 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccgGCCTTGAGCACGGCAATGTTGAGCACGCCCTGGTTCTTGCTGCGCACCAGGCCGGTGGCCGCGGCCACCTTGGGTGTGAGCATGCTCGAGGTGAATGCGCTGTAGTGCACCGTCACGTCGCCAAATACCTCCTTGCGCTCGGGG  <  NC_002947/5822311‑5822168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.