New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5858920	58 (0.660)	7 (0.100)	7/186	NT	12.3%	intergenic (+42/+96)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
	?	NC_002947	= 5858965	56 (0.840)					intergenic (+87/+51)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein

TGGCGTGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5858744‑5858920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtaaacccgctcctacgCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAACCCTGCTGGCTCAAATCTGTGAAACCAGCGCCTCCAACTGCTCCTGCCGCTCAGCCTGATTCAGCTTGGCCC  <  NC_002947/5858965‑5858817                                                                                                                                                                                                                                                                                                                                        TGGCGTGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGC                                                                                                                                                                                  <  2:779362/150‑1 TGGCGTGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGC                                                                                                                                                                                  >  1:1929304/1‑150   GCGTGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCT                                                                                                                                                                                <  2:1488827/150‑1     GTGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCT                                                                                                                                                                              >  2:1725215/1‑150      TGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTT                                                                                                                                                                             >  2:792006/1‑150        AGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCG                                                                                                                                                                           <  2:267973/150‑1         GGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGC                                                                                                                                                                          >  1:1058404/1‑150           GCAAGTTGGCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTTCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGG                                                                                                                                                                        <  2:1615497/150‑1            CAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGG                                                                                                                                                                       <  2:1483722/150‑1             AAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCGGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGT                                                                                                                                                                      >  1:697956/1‑150                TTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAA                                                                                                                                                                   >  2:1802754/1‑150                 TGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAAC                                                                                                                                                                  <  1:1639347/150‑1                      GAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTCGGCCTCTTCGCGGGTAAACCCGCT                                                                                                                                                             >  1:2119286/1‑150                           GTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTTTACCCGCgaagag                                                                                                                                                        <  2:1058404/150‑7                           GTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                        >  1:764596/1‑150                           GTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                        >  1:191244/1‑150                                   AAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTG                                                                                                                                                                                    <  1:613607/114‑1                                   AAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTG                                                                                                                                                                                    >  2:613607/1‑114                                      CGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGT                                                                                                                                             <  2:2119286/150‑1                                             GCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGAC                                                                                                                                      <  1:464875/150‑1                                                          TCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAA                                                                                                                                                                   <  2:80536/108‑1                                                          TCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAA                                                                                                                                                                   >  1:80536/1‑108                                                               CCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTAC                                                                                                                    >  1:1964340/1‑150                                                               CCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGC                                                                                                                                                              >  1:1764630/1‑108                                                               CCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGC                                                                                                                                                              <  2:1764630/108‑1                                                                                    GAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGG                                                                                               <  2:764596/150‑1                                                                                                    CAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAG                                                                               <  2:1964340/150‑1                                                                                                     AGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGC                                                                                                 <  1:537538/131‑1                                                                                                     AGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGC                                                                                                 >  2:537538/1‑131                                                                                                                                                     GCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAACCCTGCTGGCTCAAATCTGTGAAACCAGCGCCTCCAACTGCTCC                              >  1:374983/1‑150                                                                                                                                                     GCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGG                                                                                                                                           <  1:242194/41‑1                                                                                                                                                     GCCTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGG                                                                                                                                           >  2:242194/1‑41                                                                                                                                                       CTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGC                                                                                                 <  2:1670918/81‑1                                                                                                                                                       CTCTTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGC                                                                                                 >  1:1670918/1‑81                                                                                                                                                          TTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTT                                                                                                                        <  2:940093/55‑1                                                                                                                                                          TTCGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTT                                                                                                                        >  1:940093/1‑55                                                                                                                                                            CGCGGGTAAACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAACCCTGCTGGCTCAAATCTGTGAAACCAGCGCCTCCAACTGCTCCTGCCGCT                       >  1:48461/1‑150                                                                                                                                                                    AACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAACCCTGCTGGCTCAAATCTGTGAAACCAGCGCCTCCAACTGCTCCTGCCGCTCAGCCTGA               <  2:583475/150‑1                                                                                                                                                                    AACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAACCCTGCTGGCTCAAATCTGTGAAA                                                  <  1:226983/115‑1                                                                                                                                                                    AACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAACCCTGCTGGCTCAAATCTGTGAAA                                                  >  2:226983/1‑115                                                                                                                                                                     ACCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAACCCTGCTGGCTCAAATCTGTAAAATCAGCGCCTCCAACTGCTCCTGCCGCTCAGCCTGAT              >  1:1933604/1‑150                                                                                                                                                                      CCCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAACCCTGCTGGCTCAAATCTGTGAAACCAGCGCCTCCAACTGCTCCTGCCGCTCAGCCTGATT             >  1:1501576/1‑150                                                                                                                                                                       CCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAACCCTGCTGGCTCAAATCTGTGAAACCA                                               >  1:879698/1‑115                                                                                                                                                                       CCGCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAACCCTGCTGGCTCAAATCTGTGAAACCA                                               <  2:879698/115‑1                                                                                                                                                                         GCTCCTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAACCCTGCTGGCTCAAATCTGTGAAACCAGCGCCTCCAACTGCTCCTGCCGCTCAGCCTGATTCAG          >  1:1021158/1‑150                                                                                                                                                                             CTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAACCCTGCTGGCTCAAATCTGTGAAACCAGCGCCTCCAACTGCTCCTGCCGCTCAGCCTGATTCAGCTTG      >  1:131496/1‑150                                                                                                                                                                             CTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAA                                                                                  <  1:2407107/74‑1                                                                                                                                                                             CTACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAA                                                                                  >  2:2407107/1‑74                                                                                                                                                                              TACGCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAACCCTGCTGGCTCAAATCTGTGAAACCAGCGCCTCCAACTGCTCCTGCCGCTCAGCCTGATTCAGCTTGG     >  2:2354966/1‑150                                                                                                                                                                                 GCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAACCCTGCTGGCTCAAATCTGTGAAACCAGCGCCTCCAACTGCTCCTGCCGCTCAGCCTGATTCAGCTTGGCCC  >  2:630159/1‑150                                                                                                                                                                                                                                                                                                                                        TGGCGTGAGGGCAAGTTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5858744‑5858920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtaaacccgctcctacgCCGGATTGGTGGTGGACGCACATCGGTGGTTGTACAAAGGCCGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAACCCTGCTGGCTCAAATCTGTGAAACCAGCGCCTCCAACTGCTCCTGCCGCTCAGCCTGATTCAGCTTGGCCC  <  NC_002947/5858965‑5858817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.