| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5969005 | 64 (0.720) | 4 (0.050) | 5/232 | NT | 5.8% | coding (87/354 nt) | PP_5724 | hypothetical protein |
| ? | NC_002947 | = 5969012 | 70 (0.840) | coding (94/354 nt) | PP_5724 | hypothetical protein | |||||
CTCGAGGCCTTGGAAAAACAGGTAGCCGAGCTGGAAGCCCGGCTGAACCCAACTTCACAGGATGAATGAATGCAGCCCTCCAGCGCATACCCGGTACTGTTGTTTTCCTACGGCACCTTGCAGGATAAAGCCGTGCAACTGGCCAACTTTGGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5968850‑5969005‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgtTCAGCTC‑ACGGCCAAAGTTGGCCAGTTGCACGGCTTTATCCTGCAAGGTGCCGTAGGAAAACAACAGTACCGGGTATGCGCTGGAGGGCTGCATTCATTCATCCTGTGAAGTTGGGTTCAGCCGGGCTTCCAGCTCGGCTACCTGTTTT < NC_002947/5969012‑5968864 CTCGAGGCCTTGGAAAAACAGGTAGCCGAGCTGGAAGCCCGGCTGAACCCAACTTCACAGGATGAATGAATGCAGCCCTCCAGCGCATACCCGGTACTGTTGTTTTCCTACGGCACCTTGCAGGATAAAGCCGTGCAACTGGCCAACTTT < 1:2047535/150‑1 TCGAGGCCTTGGAAAAACAGGTAGCCGAGCTGGAAGCCCGGCTGAACCCAACTTCACAGGATGAATGAATGCAGCCCTCCAGCGCATACCCGGTACTGTTGTTTTCCTACGGCACCTTGCAGGATAAAGCCGTGCAACTGGCCAACTTTG < 1:1128205/150‑1 TCGAGGCCTTGGAAAAACAGGTAGCCGAGCTGGAAGCCCGGCTGAACCCAACTTCACAGGATGAATGAATGCAGCCCTCCAGCGCATACCCGGTACTGTTGTTTTCCTACGGCACCTTGCAGGATAAAGCCGTGCAACTGGCCAACTTTG > 1:29018/1‑150 GAGGCCTTGGAAAAACAGGTAGCCGAGCTGGAAGCCCGGCTGAACCCAACTTCACAGGATGAATGAATGCAGCCCTCCAGCGCATACCCGGTACTGTTGTTTTCCTACGGCACCTTGCAGGATAAAGCCGTGCAACTGGCCAACTTTGGC > 1:2277109/1‑150 GCCTTGGAAAAACAGGTAGCCGAGCTGGAAGCCCGGCTGAACCCAACTTCACAGGATGAATGAATGCAGCCCTACTCTGCATACCCGGTACTGTTGTTTTCCTACGGCACCTTGCAGGATAAAGCCGTGCAACTGGCCAACTTTGGCCGT < 2:694962/150‑1 TAGCCGAGCTGGAAGCCCGGCTGAACCCAACTTCACAGGATGAATGAATGCAGCCCTCCAGCGCATACCCGGTACTGTTGTTTTCCTACGGCACCTTGCAGGATAAAGCCGTGCAACTGGCCAACTTTGGCCGTTCATCTC‑ACGGCGAAA < 2:2088727/150‑1 TAGCCGAGCTGGAAGCCCGGCTGAACCCAACTTCACAGGATGAATGAATGCAGCCCTCCAGCGCATACCCGGTACTGTTGTTTTCCTACGGCACCTTGCAGGATAAAGCCGTGCAACTGGCCAACTTTGGCCGTTCAGCTC‑ACGGCCAAA < 1:2005801/150‑1 ATGAATGCAGCCCTCCAGCGCATACCCGGTACTGTTGTTTTCCTACGGCACCTTGCAGGATAAAGCCGTGCAACTGGCCAACTTTGGCCGT < 1:967349/91‑1 ATGAATGCAGCCCTCCAGCGCATACCCGGTACTGTTGTTTTCCTACGGCACCTTGCAGGATAAAGCCGTGCAACTGGCCAACTTTGGCCGT > 2:967349/1‑91 GTTGTTTTCCTACGGCACCTTGCAGGATAAAGCCGTGCAACTGGCCAACTTTGGCCGTTCAGCTC‑ACGGCCAAAG < 1:231941/75‑1 GTTGTTTTCCTACGGCACCTTGCAGGATAAAGCCGTGCAACTGGCCAACTTTGGCCGTTCAGCTC‑ACGGCCAAAG > 2:231941/1‑75 AACTTTGGCCG‑TGAGCTGAACGGCCAAAGTTGGCCAGTTGCACGGCTTTATCCTGCAAGGTGCCGTAGGAAAACAACAGTACCGGGTATGCGCTGGAGGGCTGCATTCATTCATCCTGTGAAGTTGGGTTCAGCCGGGCTTCCAGCTCGG > 2:2176479/1‑150 AACTTTGGCCG‑TGAGCTGAACGGCCAAAGTTGGCCAGTTGCACGGCTTTATCCTGCAAGGTGCCGTAG < 1:470118/68‑1 AACTTTGGCCG‑TGAGCTGAACGGCCAAAGTTGGCCAGTTGCACGGCTTTATCCTGCAAGGTGCCGTAG > 2:470118/1‑68 GGCCGTTCAGCTC‑ACGGCCAAAGTTGGCCAGTTGCACGGCTTTATCCTGCAAGGTGCCGTAGGAAAACAACAGTACCGGGTATGCGCTGGAGGGCTGCATTCATTCATCCTGTGAAGTTGGGTTCAGCCGGGCTTCCAGCTCGGCTACCT < 2:321147/150‑1 GGCCGTTCAGCTC‑ACGGCCAAAGTTGGCCAGTTGCACGGCTTTATCCTGCAAGGTGCCGTAGGAAAACAACAGTACCGGGTATGCGCTGGAGGGCTGCATTCATTCATCCTGTGAAGTTGGGTTCAGCCGGGCTTCCAGCTCGGCTACCT < 1:1317867/150‑1 GCCGTTCAGCTC‑ACGGCCAAAGTTGGCCAGTTGCACGGCTTTATCCTGCAAGGTGCCGTAGGAAAACAACAGTACCGGGTATGCGCTGGAGGGCTGCATTCATTCATCCTGTGAAGTTGGGTTCAGCCGGGCTTCCAGCTCGGCTACCTG > 2:2277109/1‑150 GCCGTTCAGCTC‑ACGGCCAAAGTTGGCCAGTTGCACGGCTTTATCCTGCAAGGTGCCGTAGGAAAACAACAGTACCGGGTATGCGCTGGAGGGCTGCATTCATTCATCCTGTGAAGTTGGGTTCAGCCGGGCTTCCAGCTCGGCTACCTG > 2:273970/1‑150 CGTTCAGCTC‑ACGGCCAAAGTTGGCCAGTTGCACGGCTTTATCCTGCAAGGTGCCGTAGGAAAACAACAGTACCGGGTATGCGCTGGAGGGCTGCATTCATTCATCCTGTGAAGTTGGGTTCAGCCGGGCTTCCAGCTCGGATACCTGTT > 1:1699178/1‑150 TTCAGCTC‑ACGGCCAAAGTTGGCCAGTTGCACGGCTTTATCCTGCAAGGTGCCGTAGGAAAACAACAGTACCGGGTATGCGCTGGAGGGCTGCATTCATTCATCCTGTGAAGTTGGGTTCAGCCGGGCTTCCAGCTCGGCTACCTGTTTT < 1:273970/150‑1 CTCGAGGCCTTGGAAAAACAGGTAGCCGAGCTGGAAGCCCGGCTGAACCCAACTTCACAGGATGAATGAATGCAGCCCTCCAGCGCATACCCGGTACTGTTGTTTTCCTACGGCACCTTGCAGGATAAAGCCGTGCAACTGGCCAACTTTGGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5968850‑5969005‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgtTCAGCTC‑ACGGCCAAAGTTGGCCAGTTGCACGGCTTTATCCTGCAAGGTGCCGTAGGAAAACAACAGTACCGGGTATGCGCTGGAGGGCTGCATTCATTCATCCTGTGAAGTTGGGTTCAGCCGGGCTTCCAGCTCGGCTACCTGTTTT < NC_002947/5969012‑5968864 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |