| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5998147 = | 85 (0.960) | 6 (0.070) | 5/244 | NT | 6.4% | coding (338/339 nt) | PP_5254 | hypothetical protein |
| ? | NC_002947 | 5998177 = | 91 (1.040) | coding (308/339 nt) | PP_5254 | hypothetical protein | |||||
GCTTCCCGCAGCTGGGCGGCGTGATTACCGGCAACCTGATCGTCAACCTGTTCGTCATCCTGCCCGTGGTGTTCTACATCATGCCTTGGGTAACCCGCCGCTGC‑GCCAACTGGCTGC‑GCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5998270‑5998147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGTTACCCAAGGCATGATGTAGAACACCACGGGCAGGATGACGAACAGGTTGACGATCAGGTTGCCGGTAATCACGCCGCCCAGCTGCGGGAAGCGCGCAAACAGCGGCGCCAGCAGTTGCGGGATGACCATGGTCATCGGGCAGATCAC > NC_002947/5998177‑5998325 GCTTCCCGCAGCTGGGCGGCGTGATTACCGGCAACCTGATCGTCAACCTGTTCGTCATCCTGCCCGTGGTGTTCTACATCATGCCTTGGGTAACCAGCCGCGCA‑GCCAGTTGGC‑GCAGCGGCGGGTTACCCAAGGCATGATG < 2:937872/142‑1GCTTCCCGCAGCTGGGCGGCGTGATTACCGGCAACCTGATCGTCAACCTGTTCGTCATCCTGCCCGTGGTGTTCTACATCATGCCTTGGGTAACCAGCCGC‑GCAGCCAGTTGGC‑GCAGCGGCGGGTTACCCAAGGCATGATG > 1:937872/1‑142 GTAACCCGCCGCTGC‑GCCAACTGGCTGC‑GCGGCTGGTTACCCAAGGCATGATGTAGAACACCACGGGCAGGATGACGAACAGGTTGACGATCAGGTTGC > 1:557239/1‑99 GTAACCCGCCGCTGC‑GCCAACTGGCTGC‑GCGGCTGGTTACCCAAGGCATGATGTAGAACACCACGGGCAGGATGACGAACAGGTTGACGATCAGGTTGC < 2:557239/99‑1 CCGCCGCTGC‑GCCAACTGGCTGC‑GCGGCGGGTTACCCAAGGCATGATGTAGAACACCACGGGCAGGATGACGAACAGGTTGACGATCAGGTTGCCGGTAATCACGCCGCCCAGCTGCGGGAAGCGCGCAAACAGCGGCGCCAGCAGTTGC > 1:1281879/1‑150 CCGCCGCTGC‑GCCAACTGGCTGC‑GCGGCGGGTTACCCAAGGCATGATGTAGAACACCACGGGCAGGATGACGAACAGGTTGACGATCAGGTTGCCGGTAATCACGCCGCCCAGCTGCGGGAAGCGCGCAAACAGCGGCGCCAGCAGTTGC > 2:2350850/1‑150 GGTTACCCAAGGCATGATGTAGAACACCACGGGCAGGATGACGAACAGGTTGACGATCAGGTTGCCGGTAATCACGCCGCCCAGCTGCGGGAAGCGCGCAAACAGCGGCGCCAGCAGTTGCGGGATGACCATGGTCATCGGGCAGATCAC > 1:820441/1‑150 GCTTCCCGCAGCTGGGCGGCGTGATTACCGGCAACCTGATCGTCAACCTGTTCGTCATCCTGCCCGTGGTGTTCTACATCATGCCTTGGGTAACCCGCCGCTGC‑GCCAACTGGCTGC‑GCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5998270‑5998147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGTTACCCAAGGCATGATGTAGAACACCACGGGCAGGATGACGAACAGGTTGACGATCAGGTTGCCGGTAATCACGCCGCCCAGCTGCGGGAAGCGCGCAAACAGCGGCGCCAGCAGTTGCGGGATGACCATGGTCATCGGGCAGATCAC > NC_002947/5998177‑5998325 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |