| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6009165 = | 34 (0.380) | 13 (0.200) | 11/180 | NT | 50.2% | intergenic (+6/+76) | norM/PP_5263 | multidrug resistance protein NorM/GGDEF domain‑containing protein |
| ? | NC_002947 | 6009242 = | 1 (0.020) | coding (1667/1668 nt) | PP_5263 | GGDEF domain‑containing protein | |||||
CGACCAGGTGCAAGGCTTCCTGGTCAGCAGACCGCTACCGATAGGGGAATTGATGGCGTATTTGCTGCAGGCGCCTGGCCGCCAGTTGGAGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6009343‑6009165‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCACTCTCCACA > NC_002947/6009242‑6009388 CGACCAGGTGCAAGGCATCCTGGTCAGCAGACCGCTACCGATAGGGGAATTGGTGGCGTATTTGCTGCAGGCGCCTGGCCGCCAGTTGGAGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGCACCGCGCAATCCTG < 2:297520/150‑1 GACCAGGTGCAAGGCTTCCTGGTCAGCAGACCGCTACCGATAGGGGAATTGATGGCGTATTTGCTGCAGGCGCCTGGCCGCCAGTTGGAGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGT < 2:1885751/150‑1 GACCAGGTGCAAGGCTTCCTGGTCAGCAGACCGCTACCGATAGGGGAATTGATGGCGTATTTGCTGCAGGCGCCTGGCCGCCAGTTGGAGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGT < 2:313610/150‑1 ACCAGGTGCAAGGCTTCCTGGTCAGCAGACCGCTACCGATAGGGGCATTGCTGGCGTGTTTGCTGCAAGCGCCTGGCCGCCAGTTGGGGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTG < 1:42991/150‑1 ACCAGGTGCAAGGCTTCCTGGTCAGCAGACCGCTACCGATAGGGGAATTGATGGCGTATTTGCTGCAGGCGCCTGGCCGCCAGTTGGAGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTG < 1:1097078/150‑1 CCAGGTGCAAGGCTTCCTGGTCAGCAGACCGCTACCGATAGGGGAATTGATGGCGTATTTGCTGCAGGCGCCTGGCCGCCAGTTGGAGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTGG < 1:500673/150‑1 CTTCCTGGTCAGCAGACCGCTACCGATAGGGGAATTGATGGCGTATTTGCTGCAGGCGCCTGGCCGCCAGTTGGAGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGC < 1:198769/150‑1 TCCTGGTCAGCAGACCGCTACCGATAGGGGAATTGATGGCGTATTTGCTGCAGGCGCCTGGCCGCCAGTTGGAGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCC < 1:1031613/150‑1 ATTGATGGCGTATTTGCTGCAGGCGCCTGGCCGCCAGTTGGAGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTG > 2:1489303/1‑104 ATTGATGGCGTATTTGCTGCAGGCGCCTGGCCGCCAGTTGGAGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTG < 1:1489303/104‑1 GATGGCGTATTTGCTGCAGGCGCCTGGCCGCCAGTTGGAGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGA < 2:1473214/123‑1 GATGGCGTATTTGCTGCAGGCGCCTGGCCGCCAGTTGGAGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGA > 1:1473214/1‑123 GCGTATTTGCTGCAGGCGCCTGGCCGCCAGTTGGAGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGT > 2:2152429/1‑108 GCGTATTTGCTGCAGGCGCCTGGCCGCCAGTTGGAGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGT < 1:2152429/108‑1 CTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCC > 1:1442211/1‑70 CTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCC < 2:1442211/70‑1 TCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTGGGAGCG < 2:1490890/51‑1 TCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTGGGAGCG > 1:1490890/1‑51 CCCGCTCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGC > 2:1446696/1‑88 CCCGCTCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGC < 1:1446696/88‑1 GCTCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGG > 2:1858970/1‑126 GCTCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGG < 1:1858970/126‑1 TCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGC < 1:1873937/141‑1 TCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGC > 2:1873937/1‑141 CCACAGGGACCGTGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACA < 1:638745/60‑1 CCACAGGGACCGTGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACA > 2:638745/1‑60 CCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGG > 1:1637248/1‑150 CCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCA < 1:770013/88‑1 CCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCA > 2:770013/1‑88 AGGGACCGCGCAATCGTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATC > 2:888324/1‑110 AGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATC < 1:888324/110‑1 CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCG < 1:2142201/103‑1 CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCG > 2:2142201/1‑103 CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCT < 1:705/67‑1 CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCT > 2:705/1‑67 CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCATACAGAACACCCCCTAAACGGTGGCCAGGCGCCTGCATTAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGC > 1:420817/1‑150 TGGGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACA > 1:1778113/1‑150 GGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACAAC < 1:313610/150‑1 GGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACAAC < 2:198769/150‑1 GGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGG < 2:2165579/92‑1 GGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGG < 2:964484/92‑1 GGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGG > 1:964484/1‑92 GGAGCGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGG > 1:2165579/1‑92 CGGGCGTGCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACAACGTCA > 2:2288195/1‑150 GCCCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTC < 2:1637248/150‑1 CCGCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTT < 1:1885751/150‑1 GCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCA < 2:1778113/150‑1 GCGAAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCA > 2:842514/1‑150 AAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCA > 2:1580496/1‑91 AAGAGGCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCA < 1:1580496/91‑1 GCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCG < 1:717476/118‑1 GCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCG > 2:717476/1‑118 GCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCC < 1:1651855/93‑1 GCCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACAAGGAAGCC > 2:1651855/1‑93 CCCTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACGACGTCAGCTGCTCTTGACTCTCCACA > 2:2297903/1‑150 CGACCAGGTGCAAGGCTTCCTGGTCAGCAGACCGCTACCGATAGGGGAATTGATGGCGTATTTGCTGCAGGCGCCTGGCCGCCAGTTGGAGGGTGTCCTTTAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCGCAATCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6009343‑6009165‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcgtgcccgcgaagaggcccTAAAGGACACCCTCCAACTGGCGGCCAGGCGCCTGCAGCAAATACGCCATCAATTCCCCTATCGGTAGCGGTCTGCTGACCAGGAAGCCTTGCACCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCACTCTCCACA > NC_002947/6009242‑6009388 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |