| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6086442 = | 77 (0.870) | 14 (0.170) | 10/228 | NT | 16.1% | intergenic (+59/‑93) | aspA/oruR | aspartate ammonia‑lyase/ornithine utilization transcriptional regulator |
| ? | NC_002947 | 6086469 = | 75 (0.910) | intergenic (+86/‑66) | aspA/oruR | aspartate ammonia‑lyase/ornithine utilization transcriptional regulator | |||||
TGGCTGGGACGCATTACGGAGCAAGTTATGTGCCGATATCCGGGGCTGCAGGCAAACCACATACCCTGCCGGCGCGGCCGGGTGTTGCGAAGGCTGCATAGCGGCCTCCAAAACCTTCAGGCAAAAAAAAGGCCCGA‑A‑GCAAGCGCTCGGGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6086596‑6086442‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggccttTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTTTGCCTGCAGCCCCGGATATCGGCACATAACTTGCTCCGTAATGCGTCCCAGCCAAACGGGATTACCCAGCATGC > NC_002947/6086469‑6086616 TGGCTGGGACGCATTACGGAGCAAGTTATGTGCCGATATCCGGGGCTGCAGGCAAACCACATACCCTGCCGGCGCGGCCGGGTGTTGCGAAGGCTGCATAGCGGCCTCCAAAACCTTCAGGCAAAAAAAAGGCCCGA‑A‑GCAAGCGCTCGG < 1:1359430/150‑1 TGGGACGCATTACGGAGCAAGTTATGTGCCGATATCCGGGGCTGCAGGCAAACCACATACCCTGCCGGCGCGGCCGGGTGTTGCGAAGGCTGCATAGCGGCCTCCAAAACCTTCAGGCAAAAAAAAGGCCCGA‑A‑GCAAGCGCTCGGGCCT > 2:580362/1‑150 GGGACGCATTACGGAGCAAGTTATGTGCCGATATCCGGGGCTGCAGGCAAACCACATACCCTGCCGGCGCGGCCGGGTGTTGCGAAGGCTGCATAGCGGCCTCCAAAACCTTCAGGCAAAAAAAAGGCCCGA‑A‑GCAAGCGCTCGGGCCTT < 2:1072326/150‑1 ACGGAGCAAGTTATGTGCCGATATCCGGGGCTGCAGGCAAACCACATACCCTGCCGGCGCGGCCGGGTGTTGCGAAGGCTGCATAGCCGCCTCCCAAACCTTTAGGCAAAATAAAGGCCCGAGC‑GCTTGC‑TTCGGGCCTTTTTTTTGCCT < 1:298380/150‑1 GCAAACCACATACCCTGCCGGCGCGGCCGGGTGTTGCGAAGGCTGCATAGCGGCCTCCAAAACCTTCAGGCAAAAAAAAGGCCCGA‑A‑GCAAGCGCTCGGGCCTT > 2:1094783/1‑104 GCAAACCACATACCCTGCCGGCGCGGCCGGGTGTTGCGAAGGCTGCATAGCGGCCTCCAAAACCTTCAGGCAAAAAAAAGGCCCGA‑A‑GCAAGCGCTCGGGCCTT < 1:1094783/104‑1 AAACCACATACCCTGCCGGCGCGGCCGGGTGTTGCGAAGGCTGCATAGCGGCCTCCAAAACCTTCAGGCAAAAAAAAGGCCCGA‑A‑GCAAGCGCTCGG > 2:2340972/1‑97 AAACCACATACCCTGCCGGCCCGGCCGGGTGTTGCGAAGGCTGCATAGCGGCCTCCAAAACCTTCAGGCAAAAAAAAGGCCCGA‑A‑GCAAGCGCTCGG < 1:2340972/97‑1 ACATACCCTGCCGGCGCGGCCGGGTGTTGCGAAGGCTGCATAGCGGCCTCCAAAACCTTCAGGCAAAAAAAAGGCCCGAGC‑GCTTGC‑TTCGGGCCTTTTTTTTGCCTGAAGGTTTT > 1:361827/1‑116 ACATACCCTGCCGGCGCGGCCGGGTGTTGCGAAGGCTGCATAGCGGCCTCCAAAACCTTCAGGCAAAAAAAAGGCCCGA‑GCGCTTGC‑TTCGGGCCTTTTTTTTGCCTGAAGGTTTT < 2:361827/116‑1 TACCCTGCCGGCGCGGCCGGGTGTTGCGAAGGCTGCATAGCGGCCTCCAAAACCTTCAGGCAAAAAAAAGGCCCGA‑A‑GCAAGCGCTCGG > 1:1310382/1‑89 TACCCTGCCGGCGCGGCCGGGTGTTGCGAAGGCTGCATAGCGGCCTCCAAAACCTTCAGGCAAAAAAAAGGCCCGA‑A‑GCAAGCGCTCGG < 2:1310382/89‑1 cCCAAAACCTTCAGGCAAAAAAAAGGCCCGA‑A‑GCAAGCGAACGGGCATTTTTTTTGCATGAAGGTTTTGGAGGCCGCTATGCAGCGTTAGCAACACGCGGCCGCGCCAGCAGGGTATGTGGTTTACCTGCAACACCGGATATCAGCAGAT > 2:1063242/2‑150 CAAAAAAAAGGCCCGA‑A‑GCAAGCGCTCGGGCCTTTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTTTGCCTGCAGCCCCGGATATCGGCACATAACTTGCT < 2:1512889/143‑1 CAAAAAAAAGGCCCGA‑A‑GCAAGCGCTCGGGCCTTTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTTTGCCTGCAGCCCCGGATATCGGCACATAACTTGCT > 1:1512889/1‑143 AAAAAAAAGGCCCGA‑A‑GCAAGCGCTCGGGCCTTTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTT < 1:2254593/107‑1 AAAAAAAAGGCCCGA‑A‑GCAAGCGCTCGGGCCTTTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTT > 2:2254593/1‑107 GCCCGA‑A‑GCAAGCGCTCGGGCCTTTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTTTGCCTGCAGCCCCGGATATCGGCACATAACTTGCTCCGTAATGCGT < 1:2208030/144‑1 GCCCGA‑A‑GCAAGCGCTCGGGCCTTTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTTTGCCTGCAGCCCCGGATATCGGCACATAACTTGCTCCGTAATGCGT > 2:2208030/1‑144 GCCCGA‑A‑GCAAGCGCTCGGGCCTTTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTTTGCC > 1:1858214/1‑102 GCCCGA‑A‑GCAAGCGCTCGGGCCTTTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTTTGCC < 2:1858175/102‑1 GCCCGA‑A‑GCAAGCGCTCGGGCCTTTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTTTGCC < 2:1858214/102‑1 GCCCGA‑A‑GCAAGCGCTCGGGCCTTTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTTTGCC > 1:1858175/1‑102 TCGGGCCTTTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTTTGCCTGCAGCCCCGGATATCGGCACATAACTTGCTCCGTAATGCGTCCCAGCCAAACGGGATTACCC > 1:563120/1‑150 CTTTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTTTGCCTGCAGCCCCGGATATCGGCACATAACT < 2:1141049/108‑1 CTTTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTTTGCCTGCAGCCCCGGATATCGGCACATAACT > 1:1141049/1‑108 TTTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTTTGCCTGCAGCCCCGGATATCGGCACATAACTTGCTCCGTAATGCGTCCCAGCCAAACGGGATTACCCAGCATGC > 2:2220786/1‑150 TGGCTGGGACGCATTACGGAGCAAGTTATGTGCCGATATCCGGGGCTGCAGGCAAACCACATACCCTGCCGGCGCGGCCGGGTGTTGCGAAGGCTGCATAGCGGCCTCCAAAACCTTCAGGCAAAAAAAAGGCCCGA‑A‑GCAAGCGCTCGGGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6086596‑6086442‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggccttTTTTTTGCCTGAAGGTTTTGGAGGCCGCTATGCAGCCTTCGCAACACCCGGCCGCGCCGGCAGGGTATGTGGTTTGCCTGCAGCCCCGGATATCGGCACATAACTTGCTCCGTAATGCGTCCCAGCCAAACGGGATTACCCAGCATGC > NC_002947/6086469‑6086616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |