New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5099995 =57 (0.640)7 (0.100) 6/196 NT 13.8% intergenic (+33/+120) PP_4488/phhR hypothetical protein/sigma‑54 dependent transcriptional regulator
?NC_002947 5100077 = 42 (0.600)intergenic (+115/+38) PP_4488/phhR hypothetical protein/sigma‑54 dependent transcriptional regulator

Only 100 of 123 total aligned reads displayed.

AAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAA  >  NC_002947/5099850‑5100142
                                                                                                                                                 |                                                                                                                                                   
aaGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCG                                                                                                                                                 >  1:827692‑M1/1‑150 (MQ=255)
   tGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACA                                                                                                                                              <  1:1686113‑M1/150‑1 (MQ=255)
    gggagtttcccagtagtcgggccttgggcaaaagactgggtgtttcgcacacgacaattgccaacaagttgagggattactcgcttaacaagtcggcggattagttgttggtcaaagaacctggactgcgttgcagtccttTCGCGacac                                                                                                                                             >  1:1196304‑M1/142‑150 (MQ=255)
     gagtttcccagtagtcgggccttgggcaaaagactgggtgtttcgcacacgacaattgccaacaagttgagggattactcgcttaacaagtcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGAcaca                                                                                                                                            <  2:556064‑M1/10‑1 (MQ=255)
      ccAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACCTTCTCGACTCGGGCATTGTTGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCGCTGCGGGCTCCTATCGCGACACAA                                                                                                                                           >  1:899607‑M1/1‑150 (MQ=255)
      ccAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAA                                                                                                                                           >  1:909561‑M1/1‑150 (MQ=255)
        tttcccagtagtcgggccttgggcaaaagactgggtgtttcgcacacgacaattgccaacaagttgagggattactcgcttaacaagtcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAgg                                                                                                                                         <  1:1777346‑M1/13‑1 (MQ=255)
        tttcccagtagtcgggccttgggcaaaagactgggtgtttcgcacacgacaattgccaacaagttgagggattactcgcttaacaagtcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAgg                                                                                                                                         >  2:2054001‑M1/138‑150 (MQ=255)
         ttcccagtagtcgggccttgggcaaaagactgggtgtttcgcacacgacaattgacaacaagttgagggattactcgcttaacaagtcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAGGc                                                                                                                                        >  1:874794‑M1/137‑150 (MQ=255)
            ccagtagtcgggccttgggcaaaagactgggtgtttcgcacacgacaattgccaacaagttgagggattactcgcttaacaagtcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAGGCCGc                                                                                                                                     <  1:923069‑M1/17‑1 (MQ=255)
             cagtagtcgggccttgggcaaaagactgggtgtttcgcacacgacaattgccaacaagttgagggattactcgcttaacaagtcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAGGCCGCt                                                                                                                                    <  2:135815‑M1/18‑1 (MQ=255)
             cagtagtcgggccttggacaaaagactgggtgtttcgcacacgacaattgccaacaagttgagggattactcacttaacaagtcggcggattagttgttggtcaaagaacatgggactgcgttgcagtccttTCGCGACACAAGACCGCt                                                                                                                                    <  2:143055‑M1/18‑1 (MQ=255)
                 aaagTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCA                                                                                                                                <  2:937330‑M1/149‑1 (MQ=255)
                   tcgtcccttgggcaaaagactgggtgtttcgcacacgacaattgccaacaagttgagggattactcgcttaacaagtcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAGGCCGCTCCcaca                                                                                                                              <  2:645632‑M1/24‑1 (MQ=255)
                   aGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACA                                                                                                                              <  1:463294‑M1/150‑1 (MQ=255)
                       gTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAA                                                                                                                                           >  1:583505‑M1/1‑133 (MQ=255)
                       gTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAA                                                                                                                                           <  2:583505‑M1/133‑1 (MQ=255)
                        tGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATaa                                                                                                                         >  1:1463285/1‑150 (MQ=255)
                         gCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAAt                                                                                                                        >  1:82819/1‑150 (MQ=255)
                         gCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAAt                                                                                                                        <  1:1900955/150‑1 (MQ=255)
                                cGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCa                                                                                                                 >  1:1571193/1‑150 (MQ=255)
                                 gCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCGGCTCCCACAGATAGTGCGCTCAg                                                                                                                >  1:2321036/1‑150 (MQ=255)
                                 aaagactgggtgtttcgcacacgacaattgccaacaagttgagggattactcgcttaacaagtcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAg                                                                                                                <  1:2085362‑M1/38‑1 (MQ=255)
                                  cATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGc                                                                                                               <  1:503199/150‑1 (MQ=255)
                                    tGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCa                                                                                                             >  1:977278/1‑150 (MQ=255)
                                      aCCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGgtaatacgctgtgctctg                                                                                                           >  2:695424‑M1/1‑132 (MQ=255)
                                         tACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGca                                                                                                        >  2:1992131/1‑150 (MQ=255)
                                           gggggACTCCCAGGGCCAGAAGCACATTCTCGAAGACCGCGTGATGGGGAACAGCTGCTCCACCGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGcaca                                                                                                      <  2:2080235/147‑1 (MQ=255)
                                                  tCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGTGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTAtt                                                                                               >  2:36897/1‑150 (MQ=255)
                                                  tCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGc                                                                                                    >  2:561801/1‑145 (MQ=255)
                                                  tCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGc                                                                                                    <  1:561801/145‑1 (MQ=255)
                                                    ccAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTAc                                                                                             >  1:998481/1‑150 (MQ=255)
                                                    cacgacaattgccaacaagttgagggattactcgcttaacaagtcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTAc                                                                                             >  2:1777346‑M1/94‑150 (MQ=255)
                                                        ggCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGgtaatacgctgtgctctggctgagcgcattctaaaa                                                                                         <  1:695424‑M1/150‑37 (MQ=255)
                                                          ccAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGTGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtgg                                                                                       >  1:36897‑M2/1‑144 (MQ=255)
                                                           cAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtggg                                                                                      >  2:909561‑M2/1‑143 (MQ=255)
                                                            aaaagcACAGTCTCGAATGCCGCGTGATGGGGAACGGGTGCTCCTACGTTTGATACCTTGGAATCGGGGGCTGTTGGCGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtggga                                                                                     >  1:2339979‑M2/3‑142 (MQ=255)
                                                             gaagaaCATTCTCGAATACCGCGAGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGAGGCCCTGCGGGCCCCTATCGCGAAACAAGGCCGCTCCCACCGAAAAAGCGCACAAACCGAGCACAGCGTATTCCctgtgggag                                                                                    <  2:1697952‑M2/150‑10 (MQ=255)
                                                              aaGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtgggagc                                                                                   >  2:1185908‑M2/1‑140 (MQ=255)
                                                               aGCACATTCTCGAATACCGCGTGCTGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtgggagcg                                                                                  >  2:998481‑M2/1‑139 (MQ=255)
                                                               aGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtgggagcg                                                                                  >  2:1905528‑M2/1‑139 (MQ=255)
                                                                gCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtgggagcgg                                                                                 <  2:1084342‑M2/150‑13 (MQ=255)
                                                                  acaagttgagggattactcgcttaacaagtcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAg                                                                                                                                          >  2:1567309‑M1/80‑91 (MQ=255)
                                                                  acaagttgagggattactcgcttaacaagtcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAg                                                                                                                                          <  1:1567309‑M1/12‑1 (MQ=255)
                                                                    aagttgagggattactcgcttaacaagtcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCtt                                                                             >  2:2085362‑M1/78‑150 (MQ=255)
                                                                        tcGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGa                                                                                                                            <  2:79615/99‑1 (MQ=255)
                                                                         cGAATACCGCGTGATGGGGAACGGCTGCTCCCACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATctgtgggagcggccttgtgtc                                                                        >  1:517755‑M2/1‑129 (MQ=255)
                                                                         cGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCC                                                                                                                                  <  1:759183‑M1/92‑1 (MQ=255)
                                                                          gAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCTACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtgggagcggccttgtgtcg                                                                       >  2:82819‑M2/1‑128 (MQ=255)
                                                                                cgcgTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtgggagcg                                                                                  >  1:2051654‑M2/1‑122 (MQ=255)
                                                                                cgcgTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtgggagcg                                                                                  <  2:2051654‑M2/133‑12 (MQ=255)
                                                                                cgcgTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAg                                                                 <  2:977278/150‑1 (MQ=255)
                                                                                 gcgTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAgg                                                                >  2:568097/1‑150 (MQ=255)
                                                                                         gggAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtgg                                                                                       >  2:887538‑M2/1‑113 (MQ=255)
                                                                                         gggAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGcgtt                                                        <  2:1463285/150‑4 (MQ=255)
                                                                                            aaCGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgt                                                                                         >  2:534255‑M2/1‑110 (MQ=255)
                                                                                            aaCGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCa                                                     <  1:1992131/150‑1 (MQ=255)
                                                                                            aaCGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCC                                                                                                                                  >  2:420118‑M1/1‑73 (MQ=255)
                                                                                            aaCGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCC                                                                                                                                  <  1:420118‑M1/73‑1 (MQ=255)
                                                                                               tcggcggattagttgttggtcaaagaacctgggactgcgttgcagtccttTCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTAc                                                                                             <  1:202202‑M1/57‑1 (MQ=255)
                                                                                                  tgctCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCa                                               >  1:744075/1‑150 (MQ=255)
                                                                                                   gctCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAg                                              <  2:405736/150‑1 (MQ=255)
                                                                                                     tCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGgtaatacgctgtgctctggctgagcgcattatctgtg                                                                                        <  2:1453467‑M1/106‑38 (MQ=255)
                                                                                                     tCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGgtaatacgctgtgctctggctgagcgcattatctgtg                                                                                        >  1:1453467‑M1/1‑69 (MQ=255)
                                                                                                     tCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTAc                                                                                             <  1:372274/101‑1 (MQ=255)
                                                                                                     tCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTAc                                                                                             >  2:372274/1‑101 (MQ=255)
                                                                                                      ccAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtgggagcggccttgt                                                                           >  1:2218192‑M2/1‑100 (MQ=255)
                                                                                                      ccAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtgggagcggccttgt                                                                           <  2:2218192‑M2/118‑19 (MQ=255)
                                                                                                       cAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGcaca                                                                                                      <  2:599676/90‑1 (MQ=255)
                                                                                                       cAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAATCCCAGGTTc                                          >  2:1404180/1‑150 (MQ=255)
                                                                                                        aaCGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCt                                         >  1:556064/1‑150 (MQ=255)
                                                                                                        aaCGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCATATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAATGCAAAGCAGTCGCAGGTTCt                                         >  2:1044212/1‑150 (MQ=255)
                                                                                                          cGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGTGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCttt                                       <  1:2262985/150‑1 (MQ=255)
                                                                                                          cGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCATATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCCAGGGTAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCttt                                       <  1:1044212/150‑1 (MQ=255)
                                                                                                            gCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGATGCTAAAGGACTGCAACGCAGTCCCAGGTTCTTTGa                                     <  1:572267/150‑1 (MQ=255)
                                                                                                             cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATaa                                                                                                                         >  2:1186641/1‑65 (MQ=255)
                                                                                                             cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATaa                                                                                                                         <  1:1186641/65‑1 (MQ=255)
                                                                                                             cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc                                    <  1:1084342/150‑1 (MQ=255)
                                                                                                             cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc                                    <  2:827692/150‑1 (MQ=255)
                                                                                                             cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc                                    <  1:568097/150‑1 (MQ=255)
                                                                                                             cTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc                                    <  1:1448257/150‑1 (MQ=255)
                                                                                                              tGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAcc                                   >  1:1086851/1‑150 (MQ=255)
                                                                                                                 tACCTTGGAAGCGGGGGCCCGGCGCGCCCATATCGCGACACAAGGCCGCTCCTACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTTTGGGAGCGGCCTTGTGTTGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACcaac                                <  1:199518/150‑1 (MQ=38)
                                                                                                                    cTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtgg                                                                                       >  2:2202707‑M2/1‑86 (MQ=255)
                                                                                                                    aaagaacctgggactgcgttgcagtccttTCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGc                                                                                   <  1:75009‑M1/67‑1 (MQ=255)
                                                                                                                    aaagaacctgggactgcgttgcagtccttTCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGc                                                                                   >  2:75009‑M1/30‑96 (MQ=255)
                                                                                                                     ttGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtgggagcggcctt                                                                             <  1:2181427‑M2/101‑17 (MQ=255)
                                                                                                                     ttGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACctgtgggagcggcctt                                                                             >  2:2181427‑M2/1‑85 (MQ=255)
                                                                                                                         aaTCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATc                        >  2:1293869/1‑150 (MQ=255)
                                                                                                                              ggggCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCt                                         <  2:2348476/128‑1 (MQ=255)
                                                                                                                              ggggCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCt                                         >  1:2348476/1‑128 (MQ=255)
                                                                                                                              ggggCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCCCAGCCCGAGCACAGCGAATTAGCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCACGGTCTTTGACCAACAACTAATccgccg                   >  1:1926002/1‑150 (MQ=38)
                                                                                                                                ggCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc                                    >  1:30385/1‑131 (MQ=255)
                                                                                                                                ggCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGAc                                    <  2:30385/131‑1 (MQ=255)
                                                                                                                                   ccTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAc                                                              >  1:2140205/1‑102 (MQ=255)
                                                                                                                                   ccTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTg              <  2:1497784/150‑1 (MQ=255)
                                                                                                                                         ggCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGc        >  1:82292/1‑150 (MQ=255)
                                                                                                                                               tATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCttt                                       >  1:329792/1‑113 (MQ=255)
                                                                                                                                                 TCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACcaacaa                              <  2:1477910‑M1/120‑1 (MQ=255)
                                                                                                                                                 TCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACcaacaa                              >  1:1477910‑M1/1‑120 (MQ=255)
                                                                                                                                                 |                                                                                                                                                   
AAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAA  >  NC_002947/5099850‑5100142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.