New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5816900 =85 (0.960)15 (0.180) 7/228 NT 16.8% intergenic (+30/+99) PP_5092/pilT NLP/P60 protein/twitching motility protein
?NC_002947 5816983 = 70 (0.850)intergenic (+113/+16) PP_5092/pilT NLP/P60 protein/twitching motility protein

Only 100 of 120 total aligned reads displayed.

GCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGGTTACGCA  >  NC_002947/5816834‑5817132
                                                                                                                                                     |                                                                                                                                                     
        agcagcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCttt                                                                                                                                               <  1:1026243/150‑1 (MQ=255)
         gcagcagcTGGCTCGGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCAGCTCTCACAGGTAGCGCGTCGATCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTg                                                                                                                                              <  1:1695307/150‑1 (MQ=38)
          cagcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGc                                                                                                                                             <  2:151219/150‑1 (MQ=255)
            gcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAg                                                                                                                                           <  2:729758/150‑1 (MQ=255)
             cagcTGAGTCTGGCCAAGCGTTCAGCTGATCGGCGCTCCCCGGTCCCGCCCCCTTCGCTGGCACGCCCGCTCCCACAGGTAGCGCTTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAgg                                                                                                                                          <  2:1237400/150‑1 (MQ=38)
               gcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGta                                                                                                                                        <  1:1891114/150‑1 (MQ=255)
                      cTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAGATGTTGTCGAGGGCGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAg                                                                                                                                 <  1:1623670/150‑1 (MQ=38)
                         gCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCt                                                                                                                              >  1:135451/1‑150 (MQ=255)
                         gCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCt                                                                                                                              <  2:1995877/150‑1 (MQ=255)
                           cAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACaa                                                                                                                                  >  1:2238345/1‑144 (MQ=255)
                           cAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCttt                                                                                                                            >  1:2009207/1‑150 (MQ=255)
                            aaGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTGGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCCCTCGCGCGCAGCTCACATACTTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTg                                                                                                                           >  1:2302542/1‑150 (MQ=255)
                                 ttAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGaaa                                                                                                                                                       <  1:2024736/117‑1 (MQ=255)
                                      cTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCACACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTc                                                                                                                 <  2:1864564/150‑1 (MQ=255)
                                           cGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTcc                                                                                                            <  1:1971899/150‑1 (MQ=255)
                                            ttgtagtacctgcaaaggccctTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGc                                                                                                                                             >  2:848135‑M1/23‑116 (MQ=255)
                                               gcTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCa                                                                                                        <  1:1688435/150‑1 (MQ=255)
                                                   tCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCt                                                                                                    <  2:2375444/150‑1 (MQ=255)
                                                     cGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTcc                                                                                                  >  1:1130985/1‑150 (MQ=255)
                                                      ggTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCg                                                                                                 <  2:534512/150‑1 (MQ=255)
                                                       gcaaaggccctttcgcgggcgcgcccgctcccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaAGGGCCTTTGCAGGTACTACaa                                                                                                                                  <  1:848135‑M2/22‑1 (MQ=255)
                                                       gcaaaggccctttcgcgggcgcgcccgctcccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaAGGGCCTTTGCAGGTACTACaa                                                                                                                                  >  2:848135‑M2/95‑116 (MQ=255)
                                                         aCCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCaa                                                                                              <  2:2186502/150‑1 (MQ=255)
                                                           cGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCttt                                                                                                                            >  2:60881/1‑118 (MQ=255)
                                                             gCCCCGTCGCGGGTACGCCCGTTGCCACTGGGACCGCGTCGCTATCGCTGTCAGCTCACATACCTGTGGGGGCGGGCGCGCCCTCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGcc                                                                                          <  1:872258/150‑1 (MQ=255)
                                                               cccTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGcccc                                                                                        >  1:1298982/1‑150 (MQ=255)
                                                                ccTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGCTCAACCCTCGCTCCCTCAGCCTCCGCAACGccccc                                                                                       >  1:708896/1‑150 (MQ=255)
                                                                ccTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGccccc                                                                                       <  2:2009207/150‑1 (MQ=255)
                                                                  ttCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAgggccggtaccggatagcgccgatcagctgaacgcttggccagactcagctgctgctctttcggca                                                                                     <  1:869162‑M2/150‑67 (MQ=255)
                                                                    cgcgcgCACGGCCGCTCCCACACGTAGCGGGTCGCGCGCGCCGCCAGCCTACACACCTGCGTAAGCGGGCGCGCCCGCGAAGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAGCCCTCGCTCCCGCAGCCTCCGCAACGCCCCCTCCa                                                                                   <  2:1096235/150‑1 (MQ=255)
                                                                            cGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAgggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgctt                                                                           >  2:869162‑M2/1‑74 (MQ=255)
                                                                               ccGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGTGCCCGCGAAGgggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggc                                                                        <  1:1370986‑M2/150‑80 (MQ=255)
                                                                               ccGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATc                                                                        >  1:575735/1‑150 (MQ=255)
                                                                               ccGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGAGGACGCGCCCGCGAAAGGGCGTTGGCAGGTACTATAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATc                                                                        >  1:1497632/1‑150 (MQ=255)
                                                                                 gCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATccc                                                                      <  2:1298982/150‑1 (MQ=255)
                                                                                 gCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATccc                                                                      >  2:1217508/1‑150 (MQ=255)
                                                                                   tcccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaAGGGCCTTCGCAGGTACTACAAGCCTTTGa                                                                                                                          >  2:855137‑M2/67‑96 (MQ=255)
                                                                                   tcccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaAGGGCCTTCGCAGGTACTACAAGCCTTTGa                                                                                                                          <  1:855137‑M2/30‑1 (MQ=255)
                                                                                   tCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAGgggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttc                                                                                         <  2:1912694‑M2/129‑63 (MQ=255)
                                                                                   tCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAGgggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttc                                                                                         >  1:1912694‑M2/1‑67 (MQ=255)
                                                                                   tCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAgggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgc                                                                             <  2:1798226‑M2/141‑75 (MQ=255)
                                                                                   tCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAgggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgc                                                                             >  1:1798226‑M2/1‑67 (MQ=255)
                                                                                     ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAAc                                                                                                                     >  1:596534‑M2/65‑99 (MQ=255)
                                                                                     ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAAc                                                                                                                     <  2:596534‑M2/35‑1 (MQ=255)
                                                                                     ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAAcc                                                                                                                    <  2:160344‑M2/36‑1 (MQ=255)
                                                                                     ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTcc                                                                  >  1:1570959‑M2/65‑150 (MQ=255)
                                                                                     ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgcgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTg                                                                                                                           <  1:1362067‑M2/29‑1 (MQ=255)
                                                                                     ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGTGCCCGCGACGgggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccac                                                                  <  1:922029‑M2/150‑86 (MQ=255)
                                                                                     ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGTGCCCGCGAAGgggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccac                                                                  <  2:1556203‑M2/150‑86 (MQ=255)
                                                                                     ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAgggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccac                                                                  <  1:2202649‑M2/150‑86 (MQ=255)
                                                                                     ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAgggccggtaccggatagcgccgatca                                                                                                                             >  1:1010471‑M2/1‑65 (MQ=255)
                                                                                     ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCaa                                                                                                                      >  2:1220996/1‑98 (MQ=255)
                                                                                     ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCaa                                                                                                                      <  1:1220996/98‑1 (MQ=255)
                                                                                     ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTcc                                                                  <  1:155225/150‑1 (MQ=255)
                                                                                     ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTcc                                                                  >  1:672058/1‑150 (MQ=255)
                                                                                     ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGAAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTcc                                                                  >  1:1679511/1‑150 (MQ=255)
                                                                                      cacaGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGTGCCCGCGAAGgggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccacg                                                                 <  2:1994352‑M2/150‑87 (MQ=255)
                                                                                      cacaGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGTGCCCGCGAAGgggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccacg                                                                 <  1:1710991‑M2/150‑87 (MQ=255)
                                                                                      cacaGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGc                                                                                                                                             >  2:1539001/1‑74 (MQ=255)
                                                                                      cacaGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGc                                                                                                                                             <  1:1539001/74‑1 (MQ=255)
                                                                                      cacaGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAg                                                                                                                                           >  2:491859/1‑76 (MQ=255)
                                                                                      cacaGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAg                                                                                                                                           <  1:491859/76‑1 (MQ=255)
                                                                                       acaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgcgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTccgc                                                                >  2:843589‑M2/63‑150 (MQ=255)
                                                                                        caGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCa                                                                                                        >  2:2076225/1‑109 (MQ=255)
                                                                                        caGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCa                                                                                                        <  1:2076225/109‑1 (MQ=255)
                                                                                           gtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgcgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATc                                                                                 >  1:2137717‑M2/59‑129 (MQ=255)
                                                                                           gtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgcgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATc                                                                                 <  2:2137717‑M2/71‑1 (MQ=255)
                                                                                           gTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGTGCCCGCGAAGgggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccacgtagtg                                                            <  2:584525‑M2/150‑92 (MQ=255)
                                                                                            tAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCa                                                                                                        <  1:1192275/105‑1 (MQ=255)
                                                                                            tAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCa                                                                                                        >  2:1192275/1‑105 (MQ=255)
                                                                                            tAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGccgccc                                                           >  1:537404/1‑150 (MQ=255)
                                                                                               cgcgTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGaaa                                                                                                                                                       <  1:333456/55‑1 (MQ=255)
                                                                                               cgcgTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGaaa                                                                                                                                                       >  2:333456/1‑55 (MQ=255)
                                                                                                 cgTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCcgccccgccc                                                      <  2:1794320/150‑1 (MQ=255)
                                                                                                  gTCGCTCTCGCGCGCGGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGAAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCt                                                     <  2:1679511/150‑1 (MQ=255)
                                                                                                   tCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTg                                                    >  1:469493/1‑150 (MQ=255)
                                                                                                    cGCCCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGc                                                   <  2:2302542/150‑1 (MQ=255)
                                                                                                     gCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTccc                                                                                                           >  2:401913/1‑93 (MQ=255)
                                                                                                     gCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTccc                                                                                                           <  1:401913/93‑1 (MQ=255)
                                                                                                       tctcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATc                                                >  2:1141812/1‑150 (MQ=255)
                                                                                                       tctcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCCGCATc                                                >  2:1026011/1‑150 (MQ=255)
                                                                                                        ctcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCACCCCGCCCTGCATCa                                               <  2:135451/150‑1 (MQ=255)
                                                                                                         tcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCa                                                                                                        <  1:1196356/92‑1 (MQ=255)
                                                                                                         tcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCAc                                              >  1:1276025/1‑150 (MQ=255)
                                                                                                             gcgcAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGaa                                          <  2:537404/150‑1 (MQ=255)
                                                                                                                  gacgcgctacctgtgggagcgggcgcgcccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACaa                                     <  1:843589‑M2/115‑1 (MQ=255)
                                                                                                                  gCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACaa                                     <  2:1497632/150‑1 (MQ=255)
                                                                                                                  gCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCGTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCATCCGCCACCCCCCCTCCACCCGCAGCACACCCCCCCCCCCCCCCCCCTGCCCCACTCAacacca                                     >  2:759317/1‑148 (MQ=255)
                                                                                                                   cTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAgggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccacgtagtgcttctgccagtaaggctttctcaa                                    >  2:2202649‑M2/1‑35 (MQ=255)
                                                                                                                          aCCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAAc                                                                                             >  2:2012069/1‑86 (MQ=255)
                                                                                                                            gtgtgGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAAc                           <  1:839227/149‑1 (MQ=255)
                                                                                                                            cTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCCTCACTGAAGACAACTGCGCCAAc                           >  2:1965284/1‑150 (MQ=255)
                                                                                                                                tttcgCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGcc                       >  1:315509/5‑150 (MQ=255)
                                                                                                                                cttcgcgggCACGCCCGCGAAGgggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccacgtagtgcttctgccagtaaggcttgctcaaggtgtcgatactc                       <  2:104183‑M2/146‑129 (MQ=255)
                                                                                                                                 ttcgCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGccc                      >  2:386293/4‑150 (MQ=255)
                                                                                                                                             cccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTgc                                 <  1:783251‑M2/119‑1 (MQ=255)
                                                                                                                                             cccgcgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAg          <  1:386293‑M2/142‑1 (MQ=255)
                                                                                                                                                 cgaaAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGGTTa      <  2:469493‑M2/146‑1 (MQ=255)
                                                                                                                                                     aGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGGTTACGCa  <  2:315509/150‑1 (MQ=255)
                                                                                                                                                     aGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCCGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGGTTACGCa  <  2:2182490/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGGTTACGCA  >  NC_002947/5816834‑5817132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.