New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3108920	12 (0.700)	3 (0.180)	3/266	1.9	21.1%	coding (278/465 nt)	PP_2722	hypothetical protein
	?	NC_002947	= 3108938	11 (0.670)					coding (260/465 nt)	PP_2722	hypothetical protein

TCTTCTTCGATGTGATGCTCAAGCAGCTCCTTCATCACCTTGACCCGACCGGCGAACTCAAGCGTGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3108851‑3108920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctgATCTGCTTCAT‑ACGCA‑ACCAGGCACGCTTGAGTTCGCCGGTCGGGTCAAGGTGATGAAGGAGCTGCTTGAGCATCACATCGAAGAAGAGGAGGAAGAGCTCTTCCCCACCGCGAAAAAGCTCCTCGGCA  <  NC_002947/3108938‑3108810                                                                                                                                                                                                           TCTTCTTCGATGTGATGCTCAAGCAGCTCCTTCATCACCTTGACCCGACCGGCGAACTCAAGCGTGCCTGATCTGCTTCAT‑ACGCA‑ACCAGGCACGC                                                                                                        >  1:357774/1‑97 TCTTCTTCGATGTGATGCTCAAGCAGCTCCTTCATCACCTTGACCCGACCGGCGAACTCAAGCGTGCCTGATCTGCTTCAT‑ACGCA‑ACCAGGCACGC                                                                                                        <  2:357774/97‑1                                                  CGGCGAACTCAAGCGTGCCTGGT‑TGCGT‑ATGAAGCAGATCAGGCACGCTTGAGTTCGCCGGTCGGGTCAAGGTGATGAAGGAGCTGCTTGAGCATCACATCGAAGAAGAGGAGGAAGAGCTCTTCCCCACCGCGAAAAAGCTCCTCGGCA  >  1:396145/1‑150                                                                                                                                                                                                           TCTTCTTCGATGTGATGCTCAAGCAGCTCCTTCATCACCTTGACCCGACCGGCGAACTCAAGCGTGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3108851‑3108920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctgATCTGCTTCAT‑ACGCA‑ACCAGGCACGCTTGAGTTCGCCGGTCGGGTCAAGGTGATGAAGGAGCTGCTTGAGCATCACATCGAAGAAGAGGAGGAAGAGCTCTTCCCCACCGCGAAAAAGCTCCTCGGCA  <  NC_002947/3108938‑3108810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.