New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3108920	12 (0.700)	3 (0.180)	3/266	1.9	21.1%	coding (278/465 nt)	PP_2722	hypothetical protein
	?	NC_002947	= 3108938	11 (0.670)					coding (260/465 nt)	PP_2722	hypothetical protein

GGCGAGCCCCAGCTCGTCCAGTTGGTCTTTGCCGAGGAGCTTTTTCGCGGTGGGGAAGAGCTCTTCCTCCTCTTCTTCGATGTGATGCTCAAGCAGCTCCTTCATCACCTTGACCCGACCGGCGAACTCAAGCGTGCCTGGT‑TGCGT‑ATGAAGCAGATCAGGCAGCACCAGGGCGTCGACAGTCCGGTGTTCTTCCTTGGCTTCGTAATACATCTTGGCTTCCTCTTTACCACCGGCTTGCTTGATCGCCGGGTAGAGGATGTCCTC  >  NC_002947/3108781‑3109047                                                                                                                                            |                                                                                                                                  ggCGAGCCCCAGCTCGTCCAGTTGGTCTTTGCCGAGGAGCTTTTTCGCGGTGGGGAAGAGCTCTTCCTCCTCTTCTTCGATGTGATGCTCAAGCAGCTCCTTCATCACCTTGACCCGACCGGCGAACTCAAGCGTGCCTGGT‑TGCGT‑ATg                                                                                                                       >  2:31707/1‑150 (MQ=255)                 tCCAGTTGGTCTTTGCCGAGGAGCTTTTTCGCGGTGGGGAAGAGCTCTTCCTCCTCTTCTTCGATGTGATGCTCAAGCGGCCCCTTCATCACCTTGACCCGACCGGCGAACTCAAGCGTGCCTGGT‑TGCGT‑ATGAAGCAGATCAGgcagc                                                                                                       >  1:334318/1‑150 (MQ=255)                       tGGTCTTTGCCGAGGAGCTTTTTCGCGGTGGGGAAGAGCTCTTCCTCCTCTTCTTCGATGTGATGCTCAAGCAGCTCCTTCATCACCTTGACCCGACCGGCGAACTCAAGCGTGCCTGGT‑TGCGT‑ATGAAGCAGATCAGGCAGCACCAgg                                                                                                 <  1:129300/150‑1 (MQ=255)                              tGCCGAGGAGCTTTTTCGCGGTGGGGAAGAGCTCTTCCTCCTCTTCTTCGATGTGATGCTCAAGCAGCTCCTTCATCACCTTGACCCGACCGGCGAACTCAAGCGTGCCTGATCTGCTTCAT‑ACGCA‑ACcaggcacgcttgagttcgccg                                                                                          >  1:396145‑M2/1‑129 (MQ=255)                                                                       tcttctTCGATGTGATGCTCAAGCAGCTCCTTCATCACCTTGACCCGACCGGCGAACTCAAGCGTGCCTGatctgcttcatacgcaaccaggcacgc                                                                                                        <  2:357774‑M1/97‑28 (MQ=255)                                                                       tcttctTCGATGTGATGCTCAAGCAGCTCCTTCATCACCTTGACCCGACCGGCGAACTCAAGCGTGCCTGatctgcttcatacgcaaccaggcacgc                                                                                                        >  1:357774‑M1/1‑70 (MQ=255)                                                                             tcGATGTGATGCTCAAGCAGCTCCTTCATCACCTTGACCCGACCGGCGAACTCAAGCGTGCCTGGT‑TGCGT‑ATGAAGCAGATCAGGCAGCACCAGGGCGTCGACAGTCCGGTGTTCTTCCTTGGCTTCGTAATACATCTTGGCTTCctct                                           <  1:199234/150‑1 (MQ=255)                                                                                     aTGCTCAAGCAGCTCCCTCATCACCTTGACCCGACCGGCGAACTCAAGCGTGCCTGGT‑TGCGT‑ATGAAGCAGATCAGGCAGCACCAGGGCGTCGACAGTCCGGTGTTCTTCCTTGGCTTCGTAATACATCTTGGCTTCCTCTTTaccacc                                   <  2:334318/150‑1 (MQ=255)                                                                                                     ttCATCACCTTGACCCGACCGGCGAACTCAAGCGTGCCTGGT‑TGCGT‑ATGAAGCAGATCAGGCAGCACCAGGGCGTCGACAGTCCGGTGTTCTTCCTTGGCTTCGTAATACATCTTGGCTTCCTCTTTACCACCGGCTTGCTTGATCGcc                   <  1:61162/150‑1 (MQ=255)                                                                                                      tcatcaCCTTGACCCGACCGGCGAACTCAAGCGTGCCTGGT‑TGCGT‑ATGAAGCAGATCAGGCAGCACCAGGGCGTCGACAGTCCGGTGTTCTTCCTTGGCTTCGTAATACATCTTGGCTTCCTCTTTACCACCGGCTTGCTTGATCGCCg                  <  1:222403/150‑1 (MQ=255)                                                                                                                      aCCGGCGAACTCAAGCGTGCCTGGT‑TGCGT‑ATGAAGCAGATCAGGCAGCACCAGGGCGTCGACAGTCCGGTGTTCTTCCTTGGCTTCGTAATACATCTTGGCTTCCTCTTTACCACCGGCTTGCTTGATCGCCGGGTAGAGGATGtcctc  <  1:31707/150‑1 (MQ=255)                                                                                                                        cGGCGAACTCAAGCGTGCCTGgttgcgtatgaagcagatcaggcacgcttgagttcgccggtcgggtcaaggtgatgaaggagctgcttgagcatcacatcgaagaagaggaggaagagctcttccccaccgcgaaaaagctcctcggca  >  1:396145‑M1/1‑21 (MQ=255)                                                                                                                              aCTCAAGCGTGCCTGGT‑TGCGT‑ATGAAGCAGATCAGGCAGCACCAGGGCGTCGACAGTCCGGTGTTCTTCCTTGGCTTCGTAATACATCTTGGCTTCCTCTTTACCACCGGCTTGCTTGATCGCCg                  >  2:27623/1‑126 (MQ=255)                                                                                                                              aCTCAAGCGTGCCTGGT‑TGCGT‑ATGAAGCAGATCAGGCAGCACCAGGGCGTCGACAGTCCGGTGTTCTTCCTTGGCTTCGTAATACATCTTGGCTTCCTCTTTACCACCGGCTTGCTTGATCGCCg                  <  1:27623/126‑1 (MQ=255)                                                                                                                                ccAAGCGTGCCTGGT‑TGCGT‑ATGAAGCAGATCAGGCAGCACCAGGGCGTCGACAGTCCGGTGTTCTTCCTTGGCTTCGTAATACATCTTGGCTTCCTCTTTACCACCGGCTTGCTTGATCGCCGGGTAGAGGATg       >  1:69886/2‑135 (MQ=255)                                                                                                                                ccAAGCGTGCCTGGT‑TGCGT‑ATGAAGCAGATCAGGCAGCACCAGGGCGTCGACAGTCCGGTGTTCTTCCTTGGCTTCGTAATACATCTTGGCTTCCTCTTTACCACCGGCTTGCTTGATCGCCGGGTAGAGGATg       <  2:69886/134‑1 (MQ=255)                                                                                                                                    gCGTGCCTGGT‑TGCGT‑ATGAAGCAGATcaggcacgcttgagttcgccggtcgggtcaaggtgatgaaggagctgcttgagcatcacatcgaagaaga                                         >  1:357774‑M2/1‑27 (MQ=255)                                                                                                                                    gCGTGCCTGGT‑TGCGT‑ATGAAGCAGATcaggcacgcttgagttcgccggtcgggtcaaggtgatgaaggagctgcttgagcatcacatcgaagaaga                                         <  2:357774‑M2/97‑71 (MQ=255)                                                                                                                                            |                                                                                                                                  GGCGAGCCCCAGCTCGTCCAGTTGGTCTTTGCCGAGGAGCTTTTTCGCGGTGGGGAAGAGCTCTTCCTCCTCTTCTTCGATGTGATGCTCAAGCAGCTCCTTCATCACCTTGACCCGACCGGCGAACTCAAGCGTGCCTGGT‑TGCGT‑ATGAAGCAGATCAGGCAGCACCAGGGCGTCGACAGTCCGGTGTTCTTCCTTGGCTTCGTAATACATCTTGGCTTCCTCTTTACCACCGGCTTGCTTGATCGCCGGGTAGAGGATGTCCTC  >  NC_002947/3108781‑3109047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.