New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	414338 =	13 (0.760)	3 (0.180)	3/268	1.9	20.3%	coding (153/1050 nt)	waaF	ADP‑heptose:LPS heptosyltransferase II
	?	NC_002947	414374 =	11 (0.660)					coding (189/1050 nt)	waaF	ADP‑heptose:LPS heptosyltransferase II

TACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACC‑CCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGGCCGATCCTCGAGCGCATGCCTGAAGTGCGCCAGGCCTTGAGCTTCCCGCTCGGCCACGGCGCGCTGGAGCTGGCCACGCGGCGGCGCATCGGCAAGTCCCTGGCCGGCCAGTACGACCAGGCCATCCTGCTGCCCAACTCG  >  NC_002947/414193‑414452                                                                                                                                                   |                                                                                                                   gcatttcaccgcgccagccggagcgtttgggaatgccggcaaaaaagggcaccagcgccgacttgagcgagttgggcagcaggatggcctggtcgtactggccggccagggacttgccgatgcgccgccgcgtggccagctccagcgtgc                                                                                                                 >  2:213766‑M1/147‑147 (MQ=255)   cTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACC‑CCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGGCCGATCCTCGAGCGCATGCCTGAAGTGCGCCAg                                                                                                              >  1:404526/1‑150 (MQ=255)    tGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACCGCCGAC‑CCCTAATCGACGTGCTGGCCCCTGCATGGCGCCGGCCGATCCCCGAGCGCATGCCTGAAGTGCGCCAgg                                                                                                             >  1:379206/1‑150 (MQ=255)               cccAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACC‑CCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGGCCGATCCTCGAGCGCATGCCTGAAGTGCGCCAGGCCTTGAGCTTc                                                                                                  <  2:404526/150‑1 (MQ=255)                        gTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACC‑CCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGGCCGATCCTCGAGCGCATGCCTGAAGTGCGCCAGGCCTTGAGCTTCCCGCTCGGc                                                                                         <  2:341067/150‑1 (MQ=255)                                 atgccggcaaaaaagggcaccagcgccgacttgagcgagttgggcagcaggatggcctggtcgtactggccggccagggacttgccgatgcgccgccgcgtggccagctccagcGCGCCAGGCCTTGAGCTTCCCGCTCGGCCACGgcgc                                                                                 >  1:183245‑M1/115‑150 (MQ=255)                                       aTGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACC‑CCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGGCCGATCCTCGAGCGCATGCCTGAAGTGCATCGTGGCTTGAGCTTCCCGCTCGGCCACGGCGCGCTGGAg                                                                          >  1:127263/1‑150 (MQ=255)                                                     cagcgccgacttgagcgagttgggcagcaggatggcctggtcgtactggccggccagggacttgccgatgcgccgccgcgtggccagctccagcGCGCCAGGCCTTGAGCTTCCCGCTCGGCCACGGCGCGCTGGAGCTg                                                                       >  1:402256‑M1/95‑140 (MQ=255)                                                     cagcgccgacttgagcgagttgggcagcaggatggcctggtcgtactggccggccagggacttgccgatgcgccgccgcgtggccagctccagcGCGCCAGGCCTTGAGCTTCCCGCTCGGCCACGGCGCGCTGGAGCTg                                                                       <  2:402256‑M1/46‑1 (MQ=255)                                                                         agcaCC‑CCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGGCCGATCCTCGAGCGCATGCCTGAAGTGCGCCAGGCCTTGAGCTTCCCGCTCGGCCACGGCGCGCTGGAGCTGGCCACGCGGCGGCGCATCGGCAAGTCCCTgg                                        <  2:390694/150‑1 (MQ=255)                                                                                           aTCGACGTGCTGGCCCCTGAATGGAGCCGGCCGATCCTCGAGCGCATGCCTGAAGTGCGCCAGGCCTTGAGCTTCCCGCTCGGCCACGGCGCGCTGGAGCTGGCCACGCGGCGGCGCATCGGCAAGTCCCTGGCCGGCCAGTACGACCAg                       <  2:198481/150‑1 (MQ=255)                                                                                              gACGTGCTGGCCCCTGAATGGAGCCGGCCGATCCTCGAGCGCATGCCTGAAGTGCGCCAGGCCTTGAGCTTCCCGCTCGGCCACGGCGCGCTGGAGCTGGCCACGCGGCGGCGCATCGGCaa                                                <  1:396782/122‑1 (MQ=255)                                                                                              gACGTGCTGGCCCCTGAATGGAGCCGGCCGATCCTCCAGCGCATGCCGGAAGTGCGCCAGGCCTTGAGCTTCCCGCTCGGCCACGGCGCGCTGGAGCTGGCCACGCGGCGGCGCATCGGCaa                                                >  2:396782/1‑122 (MQ=255)                                                                                                   gCTGGCCCCTGAATGGAGCCGGCCGATCCTCGAGCGCATGCCTGAAGTGCGCCAGGCCTTGAGCTTCCCGCTCGGCCACGGCGCGCTGGAGCTGGCCACGCGGCGGCGCATCGGCAAGTCCCTGGCCGGCCAGTACGACCAGGCCATCct               >  2:260093/1‑150 (MQ=255)                                                                                                          ccTGAATGGAGCCGGCCGATCCTCGAGCGCATGCCTGAAGTGCGCCAGGCCTTGAGCTTCCCGCTCGGCCACGGCGCGCTGGAGCTGGCCACGCGGCGGCGCATCGGCAAGTCCCTGGCCGGCCAGTa                              >  1:58427/1‑128 (MQ=255)                                                                                                          ccTGAATGGAGCCGGCCGATCCTCGAGCGCATGCCTGAAGTGCGCCAGGCCTTGAGCTTCCCGCTCGGCCACGGCGCGCTAGAGCTGGCCACGCGGCGGCGCATCGGCAAGTCCCTGGCCGGCCAGTa                              <  2:58427/128‑1 (MQ=255)                                                                                                                tGGAGCCGGCCGATCCTCGAGCGCATGCCTGAAGTGCGCCAGGCCTTGAGCTTCCCGCTCGGCCATGGCGCGCTGGAGCTGGCCACGCGGCGGCGCATCGGCAAGTCCCTGGCCGGCCAGTACGACCAGGCCATCCTGCTGCCCCACTCg  >  2:82916/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                   TACTGATCATTGGCCCCAGCTGGGTCGGCGACATGGTGATGGCGCAGACCCTGTTCCAGTGCCTGAAACAGCAGCACC‑CCGACTGCGTGATCGACGTGCTGGCCCCTGAATGGAGCCGGCCGATCCTCGAGCGCATGCCTGAAGTGCGCCAGGCCTTGAGCTTCCCGCTCGGCCACGGCGCGCTGGAGCTGGCCACGCGGCGGCGCATCGGCAAGTCCCTGGCCGGCCAGTACGACCAGGCCATCCTGCTGCCCAACTCG  >  NC_002947/414193‑414452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.