| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1970789 | 14 (0.820) | 6 (0.370) | 4/266 | 1.6 | 30.5% | intergenic (+40/‑226) | mtnA/PP_mr25 | methylthioribose‑1‑phosphate isomerase/gyrA regulatory region |
| ? | NC_002947 | = 1970837 | 14 (0.850) | intergenic (+88/‑178) | mtnA/PP_mr25 | methylthioribose‑1‑phosphate isomerase/gyrA regulatory region | |||||
ACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTG > NC_002947/1970645‑1970937 | aCGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCAAGCCCGCgaaga < 1:38363‑M1/150‑6 (MQ=255) ccggccgACCTGATCGATGTGAGCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCAcag < 2:175634/150‑3 (MQ=255) cGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGc < 2:158703/150‑1 (MQ=255) ggtCGTGACCGAACGCGGTATCGTCGAGCGCCCGGATGCTAACAAAATGGCTGAGCTGGTTTGCCGGAAGCGCCTGGACTGATTTTGTATCGCATTACCGGCCTCTTCGCGGGCTTGCCCGCTCACACTCGGATATCGCATGGCCTTAgg < 2:26790/148‑1 (MQ=255) gtcgAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCGCTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGgc > 1:83492‑M2/1‑148 (MQ=255) gtcgcccGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGAGCCTGCACTGATTTTGTATCGCCTCACAGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGTGCCGTGGTGAACCTGTGTGGgcgggc > 2:192023‑M2/3‑144 (MQ=255) ccGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCccccacaggttcaccacggccctaaggccatgcgatatcccagtggga < 2:79628‑M1/139‑49 (MQ=255) ccGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCccccacaggttcaccacggccctaaggccatgcgatatcccagtggga < 2:79608‑M1/139‑49 (MQ=255) ccGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCccccacaggttcaccacggccctaaggccatgcgatatcccagtggga > 1:79628‑M1/1‑91 (MQ=255) ccGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCccccacaggttcaccacggccctaaggccatgcgatatcccagtggga > 1:79608‑M1/1‑91 (MQ=255) tgcCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCgtgg > 1:327277/1‑118 (MQ=255) tgcCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCgtgg < 2:327277/118‑1 (MQ=255) tgcCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAaga > 2:248933/1‑150 (MQ=255) cAAGCTGGCTCACCTGGTTTGCCGCAAGCGCCTGCACTTATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGTCCGCTCCCCCTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGc < 1:350359/150‑1 (MQ=255) gCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGTCCGCccccacaggttcaccacggccctaaggccatgcgatatcccagtgggag < 2:205302‑M1/122‑50 (MQ=255) gCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCccccacaggttcaccacggccctaaggccatgcgatatcccagtgggag > 1:205302‑M1/1‑73 (MQ=255) cTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAg < 1:235238/150‑1 (MQ=255) gCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCaa > 2:385934/1‑150 (MQ=255) gCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCa > 1:172747/1‑150 (MQ=255) gcCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCcgc < 1:75455/113‑1 (MQ=255) gcCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCcgc > 2:75455/1‑113 (MQ=255) tGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTgaga < 2:406467/150‑1 (MQ=255) aCCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCAc < 1:248933/150‑1 (MQ=255) gcccgcccacacaggttcaccacggcactaaggccatgcgatatcccagtgggagcgggcaagcccgcgaagaggcctgtgaggcgatacaaaatcagtgcaggctcttgcggcaaaccagctgagccagcttggcagcatccgggcgac > 2:192023‑M1/1‑6 (MQ=255) gcccccacaggttcaccacggccctaaggccatgcgatatcccagcgggagcgggcaagcccgcgaagaggccggtgaggcgatacaaaatcagtgcaggcgcttgcggcaaaccagctgagccagcttggcagcatccgggcgctcgac > 1:83492‑M1/1‑2 (MQ=255) cTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGgcgggcaagcccgcgaagaggccggtgaggcgatacaaaatcagtgcaggcgcttgcggcaaaccagctgagc > 1:205302‑M2/1‑49 (MQ=255) cTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGgcggacaagcccgcgaagaggccggtgaggcgatacaaaatcagtgcaggcgcttgcggcaaaccagctgagc < 2:205302‑M2/122‑74 (MQ=255) | ACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTG > NC_002947/1970645‑1970937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |