| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1970789 | 14 (0.820) | 6 (0.370) | 4/266 | 1.6 | 30.5% | intergenic (+40/‑226) | mtnA/PP_mr25 | methylthioribose‑1‑phosphate isomerase/gyrA regulatory region |
| ? | NC_002947 | = 1970837 | 14 (0.850) | intergenic (+88/‑178) | mtnA/PP_mr25 | methylthioribose‑1‑phosphate isomerase/gyrA regulatory region | |||||
GTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATT > NC_002947/1970690‑1970986 | gtcgAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCGCTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGgc > 1:83492‑M2/1‑148 (MQ=255) gtcgcccGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGAGCCTGCACTGATTTTGTATCGCCTCACAGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGTGCCGTGGTGAACCTGTGTGGgcgggc > 2:192023‑M2/3‑144 (MQ=255) tgcCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAaga > 2:248933/1‑150 (MQ=255) cAAGCTGGCTCACCTGGTTTGCCGCAAGCGCCTGCACTTATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGTCCGCTCCCCCTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGc < 1:350359/150‑1 (MQ=255) cTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAg < 1:235238/150‑1 (MQ=255) gCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCaa > 2:385934/1‑150 (MQ=255) gCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCa > 1:172747/1‑150 (MQ=255) gcCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCcgc > 2:75455/1‑113 (MQ=255) gcCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCcgc < 1:75455/113‑1 (MQ=255) tGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTgaga < 2:406467/150‑1 (MQ=255) aCCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCAc < 1:248933/150‑1 (MQ=255) cTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGgcgggcaagcccgcgaagaggccggtgaggcgatacaaaatcagtgcaggcgcttgcggcaaaccagctgagc > 1:205302‑M2/1‑49 (MQ=255) cTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGgcggacaagcccgcgaagaggccggtgaggcgatacaaaatcagtgcaggcgcttgcggcaaaccagctgagc < 2:205302‑M2/122‑74 (MQ=255) tCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGgcgggcaagcccgcgaagaggccggtgaggcgatacaaaatcagtgcaggcgcttgcggcaaaccagctgagccagcttggcagcatccgg < 2:79628‑M2/139‑92 (MQ=255) tCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGgcgggcaagcccgcgaagaggccggtgaggcgatacaaaatcagtgcaggcgcttgcggcaaaccagctgagccagcttggcagcatccgg < 2:79608‑M2/139‑92 (MQ=255) tCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGgcgggcaagcccgcgaagaggccggtgaggcgatacaaaatcagtgcaggcgcttgcggcaaaccagctgagccagcttggcagcatccgg > 1:79628‑M2/1‑48 (MQ=255) tCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGgcgggcaagcccgcgaagaggccggtgaggcgatacaaaatcagtgcaggcgcttgcggcaaaccagctgagccagcttggcagcatccgg > 1:79608‑M2/1‑48 (MQ=255) cACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATa > 1:61861/1‑150 (MQ=255) ttAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATc > 2:216200/1‑135 (MQ=255) ttAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATc < 1:216200/135‑1 (MQ=255) ggcgggcgAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCAtt > 1:51801/1‑150 (MQ=255) ggcgggcgAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCAtt < 1:385934/150‑1 (MQ=255) | GTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATT > NC_002947/1970690‑1970986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |