| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1843149 = | 0 (0.000) | 36 (1.180) | 33/256 | 0.1 | 81.8% | coding (1687/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | = 2179419 | 16 (0.530) | intergenic (+175/+93) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein | |||||
AGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1843298‑1843149‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTTG < NC_002947/2179419‑2179276 AGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACC < 1:169804/150‑1 TCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGG > 2:671178/1‑150 GACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGT > 2:204610/1‑150 GACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGT < 1:214339/150‑1 CGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGT < 2:403210/150‑1 GATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTG > 1:259154/1‑150 GATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTG > 2:639960/1‑150 ATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTAC < 2:563237/109‑1 ATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTAC > 1:563237/1‑109 GCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCA < 1:196190/150‑1 CCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGGAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGC < 2:172807/121‑1 CCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGC > 1:172807/1‑121 GTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAG < 1:175062/150‑1 gGCCCCCAGTTTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTGCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGA < 2:329769/149‑1 CCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTT < 1:204610/150‑1 ACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCA < 2:783413/118‑1 ACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCA > 1:783413/1‑118 ACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATT < 1:671178/150‑1 TGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGG < 1:749935/76‑1 TGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGG > 2:749935/1‑76 GCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTG < 1:157117/136‑1 GCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTG > 2:157117/1‑136 GCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTT < 1:639960/150‑1 GCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGC > 1:620345/1‑125 GCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGC < 2:620345/125‑1 GGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGC > 1:602300/1‑150 ACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCAAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTA > 1:665471/1‑107 ACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCAAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTA < 2:665471/107‑1 GAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATC < 2:602300/150‑1 GAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAA < 1:520007/88‑1 GAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAA > 2:520007/1‑88 CCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTT > 2:665234/1‑89 CCTCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTT < 1:665234/89‑1 TCAGCGTGAGCCTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGAT > 2:413835/1‑150 CTGTTCGCCTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTC > 2:641615/1‑150 CTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAA < 2:432597/104‑1 CTCCTACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAA > 1:432597/1‑104 TACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGT < 2:3121/87‑1 TACGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGT > 1:3121/1‑87 tctACCCAGGTTGTGTGAAAACACGCGAAATCCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACGGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCCCATGTGGCGATGTGAGTTGTTCTTGTGGTCTTTTG < 2:259154/147‑1 CCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGC > 1:184886/1‑39 CCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGC < 2:184886/39‑1 AGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1843298‑1843149‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTTG < NC_002947/2179419‑2179276 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |