| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1843149 = | 0 (0.000) | 36 (1.180) | 33/256 | 0.1 | 81.8% | coding (1687/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | = 2179419 | 16 (0.530) | intergenic (+175/+93) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein | |||||
CAAAAGACCTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGAGCCTTCTCGGATTCGCTTAAGCACGATCTC > NC_002947/2179276‑2179565 | cAAAAGACCTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGa > 1:519909/1‑150 (MQ=255)cAAAAGACCACAAGAACAACTCACATCGCCACATGGGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCCGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGGATTTCGCGTGTTTTCACACAACCTGggtaga < 2:259154‑M2/150‑7 (MQ=255) aaaaGACCTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGTTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGAt > 1:130670/1‑150 (MQ=255) cAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGcggccgg > 1:536115/1‑150 (MQ=255) gAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacag > 2:641615‑M2/1‑131 (MQ=255) tCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGCTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGAgcatca > 1:403717/1‑150 (MQ=255) aTCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctga > 2:413835‑M2/1‑120 (MQ=255) gATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctc < 2:602300‑M2/150‑56 (MQ=255) gATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCaaa < 2:536115/150‑1 (MQ=255) tttGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggag < 2:432597‑M2/104‑12 (MQ=255) tttGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggag > 1:432597‑M2/1‑93 (MQ=255) gCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcc > 1:602300‑M2/1‑88 (MQ=255) aaCCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggc < 1:639960‑M2/150‑67 (MQ=255) ccACGCCATCTCTTGCCAGTTTAGCAAGGCTCTCTAGATCCCCGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGCCCGGCCCATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTAt < 2:130670/150‑1 (MQ=255) aCGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgta > 1:3121‑M2/1‑80 (MQ=255) aCGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgta < 2:3121‑M2/87‑8 (MQ=255) cGCAATTGCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGa > 2:796663/1‑150 (MQ=255) cAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATg < 2:519909/150‑1 (MQ=255) aaTTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagt < 1:671178‑M2/150‑75 (MQ=255) cAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgc > 2:157117‑M2/1‑66 (MQ=255) cAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgc < 1:157117‑M2/136‑71 (MQ=255) gCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggc > 1:620345‑M2/1‑59 (MQ=255) gCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggc < 2:620345‑M2/125‑67 (MQ=255) aaGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgtggccatcgacaatgg < 1:204610‑M2/150‑94 (MQ=255) aaGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgagg < 1:665234‑M2/89‑33 (MQ=255) aaGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgagg > 2:665234‑M2/1‑57 (MQ=255) aGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGTGTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATc < 2:179277/150‑1 (MQ=255) tctctAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgcacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgtggccatcgaaactgggggcc < 2:329769‑M2/150‑99 (MQ=255) tctctAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCAccc > 2:295651/1‑150 (MQ=255) ctctAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgtggccatcgacaatggcggcac < 1:175062‑M2/150‑100 (MQ=255) tAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTTggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagt > 1:665471‑M2/1‑48 (MQ=255) tAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTTggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagt < 2:665471‑M2/107‑60 (MQ=255) aTCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCAtct > 1:461391/1‑150 (MQ=255) tGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagc < 1:196190‑M2/150‑111 (MQ=255) tGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgt > 1:783413‑M2/1‑40 (MQ=255) tGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgt < 2:783413‑M2/118‑79 (MQ=255) gcCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGgg < 2:184886‑M2/39‑3 (MQ=255) gcCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGgg > 1:184886‑M2/1‑37 (MQ=255) ttCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctc < 1:520007‑M2/88‑56 (MQ=255) ttCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctc > 2:520007‑M2/1‑33 (MQ=255) gcgTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgtggccatcgacaatggcggcacgg > 1:172807‑M2/1‑20 (MQ=255) gcgTGTTTTCACACAGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtctcccagctggtgctccagtgcctggcgcgccagttcgtggccatcgacaatggcggcacgg < 2:172807‑M2/121‑102 (MQ=255) cgTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGAGCCTTCTCGGATTCg > 2:29971/1‑150 (MQ=255) tttCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGAGCCTTCTCGGATTCGCTTaa < 2:403717/150‑1 (MQ=255) cacacaGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatc > 1:259154‑M2/1‑11 (MQ=255) cacacaGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatc > 2:639960‑M2/1‑11 (MQ=255) cacacaGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGAGCCTTCTCGGATTCGCTTAAGCa < 1:295651/150‑1 (MQ=255) acacaGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcg < 2:403210‑M2/150‑141 (MQ=255) acaGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtc > 2:204610‑M2/1‑8 (MQ=255) acaGCCTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtc < 1:214339‑M2/150‑143 (MQ=255) ccTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatga > 2:671178‑M2/1‑4 (MQ=255) ccTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgcca > 2:749935‑M2/1‑4 (MQ=255) ccTGggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgcca < 1:749935‑M2/76‑73 (MQ=255) ccTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGAcc < 1:781640/68‑1 (MQ=255) ccTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGAcc > 2:781640/1‑68 (MQ=255) | CAAAAGACCTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGAGCCTTCTCGGATTCGCTTAAGCACGATCTC > NC_002947/2179276‑2179565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |