| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2472183 | 15 (0.470) | 6 (0.270) | 6/188 | 2.1 | 28.9% | intergenic (+44/+105) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
| ? | NC_002947 | = 2472229 | 19 (0.850) | intergenic (+90/+59) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase | |||||
CCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2471998‑2472183‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgtgccggcctcttcgcgggtaaacccgctcctacACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATAGATCAGCTCCGCTCCAGCGCATTGACCAGATCATGGA < NC_002947/2472229‑2472105 CCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGGCAATGCGCTGGAGCGGAGCTGATCTATAGC < 1:784205/150‑1 AGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGG < 2:753450/150‑1 AAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGC < 1:1380/101‑1 AAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGC > 2:1380/1‑101 TCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCG > 2:478131/1‑150 AACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGT > 1:781543/1‑150 CTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAA < 2:781543/150‑1 ATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGC < 1:478131/150‑1 TGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGG > 1:707563/1‑119 TGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGG < 2:707563/119‑1 TCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATAGATCAGCTCCGCTCCAGCGCATTGACCAGATCATGGA > 1:637635/1‑150 TTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCG < 1:373209/67‑1 TTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCG > 2:373209/1‑67 AACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATAGATCAGCTCCGCTCCAGCGCA > 1:161556/1‑122 AACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATAGATCAGCTCCGCTCCAGCGCA < 2:161556/122‑1 CCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2471998‑2472183‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgtgccggcctcttcgcgggtaaacccgctcctacACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATAGATCAGCTCCGCTCCAGCGCATTGACCAGATCATGGA < NC_002947/2472229‑2472105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |