New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2472183	15 (0.470)	6 (0.270)	6/188	2.1	28.9%	intergenic (+44/+105)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	= 2472229	19 (0.850)					intergenic (+90/+59)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase

TGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCG  >  NC_002947/2472039‑2472324                                                                                                                                                 |                                                                                                                                              tgCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACgg                                                                                                                                          >  1:386300/1‑150 (MQ=255)                     gcgcACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAtg                                                                                                                      <  2:563624/150‑1 (MQ=255)                      cgcACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAtgt                                                                                                                     <  2:386300/150‑1 (MQ=255)                      cgcACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTACCAGTGTCTCTTCAATTCTCTGGAGCAGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAtgt                                                                                                                     <  1:181661/150‑1 (MQ=37)                                                   tCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACacctgattgggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcg                                                                                        >  2:478131‑M1/1‑95 (MQ=255)                                                      aaCCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACacctgattgggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggt                                                                                     >  1:781543‑M1/1‑92 (MQ=255)                                                                 cTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACacctgattgggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaa                                                                          <  2:781543‑M1/150‑70 (MQ=255)                                                                   tCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaaga                                                                        >  1:637635‑M2/1‑125 (MQ=255)                                                                      aTGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACacctgattgggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggc                                                                     <  1:478131‑M1/150‑75 (MQ=255)                                                                                   tGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACacctgattgggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgg                                                                                       <  2:707563‑M1/119‑57 (MQ=255)                                                                                   tGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACacctgattgggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgg                                                                                       >  1:707563‑M1/1‑63 (MQ=255)                                                                                   tGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtt                                                                                    >  1:161556‑M2/1‑109 (MQ=255)                                                                                   tGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtt                                                                                    <  2:161556‑M2/122‑14 (MQ=255)                                                                                        tGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGGAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTTTGTCCACCCCCAATCAGCAGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTaaaaa                                                   >  1:88294/1‑150 (MQ=255)                                                                                                    gATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCaa                                                                                                       >  1:115012/1‑86 (MQ=255)                                                                                                    gATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCaa                                                                                                       <  2:115012/86‑1 (MQ=255)                                                                                                             ccTGTGCCGGCCTCTTCGCGGGTAAACCCCCTCCTCCGGCGGCCTGCGCCCAAACACCAATGTGTTTCCACCCCCAATCAGGTGTAGCCAAAAGCATTCCCGCGACGACGCCCACACAGGCTGTAAAAACTCTGCATCTAACTACGCCCg                              >  2:391810/1‑150 (MQ=18)                                                                                                                    cGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATATCACTACGCCCGGTTTTTa                       >  1:562999/1‑150 (MQ=255)                                                                                                                      gCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcat                     <  1:478131‑M2/150‑77 (MQ=255)                                                                                                                         tctTCGCGGGTAAACCCGCTCCTACacctgattgggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatgga                  >  1:637635‑M1/1‑25 (MQ=255)                                                                                                                         tctTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAActc                  >  2:486910/1‑150 (MQ=255)                                                                                                                           ttCGCGGGTAAACCCGCTCCTACacctgattgggggtggacacacattggtgtttgggcgcaggccg                                                                                                   <  1:373209‑M1/67‑45 (MQ=255)                                                                                                                           ttCGCGGGTAAACCCGCTCCTACacctgattgggggtggacacacattggtgtttgggcgcaggccg                                                                                                   >  2:373209‑M1/1‑23 (MQ=255)                                                                                                                           ttCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaag                <  2:781543‑M2/150‑82 (MQ=255)                                                                                                                           ttCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTg                <  1:486910/150‑1 (MQ=255)                                                                                                                                     aaCCCGCTCCTACacctgattgggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgca                                  <  2:161556‑M1/122‑110 (MQ=255)                                                                                                                                     aaCCCGCTCCTACacctgattgggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgca                                  >  1:161556‑M1/1‑13 (MQ=255)                                                                                                                                      aCCCGCTCCTACGACGTCCTGCGCCCAAACACCAATGTGGGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAGGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCAccc     >  1:427330/1‑150 (MQ=255)                                                                                                                                      aCCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttcgcggtt     >  1:781543‑M2/1‑58 (MQ=255)                                                                                                                                       cccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTa              >  1:74833/1‑140 (MQ=255)                                                                                                                                       cccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTa              <  2:74833/140‑1 (MQ=255)                                                                                                                                        ccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgca                                  >  1:707563‑M2/1‑56 (MQ=255)                                                                                                                                        ccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgca                                  <  2:707563‑M2/119‑64 (MQ=255)                                                                                                                                        ccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCAccccc   >  1:618251/1‑150 (MQ=255)                                                                                                                                         cGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttcgcggttgga  >  2:478131‑M2/1‑55 (MQ=255)                                                                                                                                                 |                                                                                                                                              TGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCG  >  NC_002947/2472039‑2472324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.