| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1843152 | 0 (0.000) | 24 (0.780) | 21/258 | 0.6 | 64.0% | coding (1684/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | 2177745 = | 27 (0.880) | intergenic (+103/‑63) | PP_5485/PP_1931 | GNAT family acetyltransferase/hypothetical protein | |||||
ATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGACAGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCT > NC_002947/1843011‑1843298 | aTTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGACAGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgt > 2:335688‑M1/1‑142 (MQ=255) gaacgactcacatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAg > 2:641615‑M1/132‑150 (MQ=255) tGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGACAGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaac < 1:358665‑M1/150‑17 (MQ=255) gCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCTACAGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcg < 1:607355‑M1/150‑24 (MQ=255) atcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGa > 2:413835‑M1/121‑150 (MQ=255) cccAGTTGCTCGGGCGACAGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcg > 1:463808‑M1/1‑104 (MQ=255) cccAGTTGCTCGGGCGACAGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgt < 1:43927‑M1/114‑11 (MQ=255) cccAGTTGCTCGGGCGACAGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgt > 2:43927‑M1/1‑104 (MQ=255) gatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTc < 2:602300‑M1/55‑1 (MQ=255) tttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTaggag < 2:432597‑M1/11‑1 (MQ=255) tttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTaggag > 1:432597‑M1/94‑104 (MQ=255) cGGGCGACAGGTTACCCAGGTTGGCACCGAGCACCGCGACCTCGAAGCGAAGTCCGGCCTGGCTGGCTGCCTGCCCCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggg < 1:181914‑M1/150‑57 (MQ=255) gctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGcc > 1:602300‑M1/89‑150 (MQ=255) aaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGgc < 1:639960‑M1/66‑1 (MQ=255) gTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatg < 1:183359‑M1/150‑67 (MQ=255) gTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgt > 1:241763‑M1/1‑84 (MQ=255) gTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgt < 2:241763‑M1/94‑11 (MQ=255) acgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTa < 2:3121‑M1/7‑1 (MQ=255) acgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTa > 1:3121‑M1/81‑87 (MQ=255) ttACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatga < 2:463808‑M1/150‑68 (MQ=255) aatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGt < 1:671178‑M1/74‑1 (MQ=255) ccAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcg > 1:487750‑M1/1‑79 (MQ=255) ttGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattca > 2:447481‑M1/1‑74 (MQ=255) cagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGgcgcgc > 2:157117‑M1/67‑136 (MQ=255) cagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGgcgcgc < 1:157117‑M1/70‑1 (MQ=255) aCCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaa > 1:542739‑M1/1‑69 (MQ=255) ccGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaag < 2:25144‑M1/150‑83 (MQ=255) cGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaagg > 1:480494‑M1/1‑67 (MQ=255) gCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtga < 2:480494‑M1/150‑87 (MQ=255) gcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGgc < 2:620345‑M1/66‑1 (MQ=255) gcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGgc > 1:620345‑M1/60‑125 (MQ=255) aagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAgg < 1:665234‑M1/32‑1 (MQ=255) aagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAgg > 2:665234‑M1/58‑89 (MQ=255) aagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATgg < 1:204610‑M1/93‑1 (MQ=255) tctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGCACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGAAACtgggggcc < 2:329769‑M1/98‑2 (MQ=255) ctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCAc < 1:175062‑M1/99‑1 (MQ=255) tagatccctgcgcccttcaacgcatttcgcgtgttttcacacagccttGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGt > 1:665471‑M1/49‑107 (MQ=255) tagatccctgcgcccttcaacgcatttcgcgtgttttcacacagccttGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGt < 2:665471‑M1/59‑1 (MQ=255) gAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcag < 1:447481‑M1/150‑100 (MQ=255) aaGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtga > 1:403622‑M1/1‑50 (MQ=255) aaGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtga < 2:403622‑M1/136‑87 (MQ=255) cAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttaca < 1:335688‑M1/150‑106 (MQ=255) tgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGt < 2:783413‑M1/78‑1 (MQ=255) tgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGt > 1:783413‑M1/41‑118 (MQ=255) tgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGc < 1:196190‑M1/110‑1 (MQ=255) cggccTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgct > 2:165760‑M1/1‑40 (MQ=255) gccTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgc > 1:27713‑M1/1‑38 (MQ=255) ttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTc < 1:520007‑M1/55‑1 (MQ=255) ttcaacgcatttcgcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTc > 2:520007‑M1/34‑88 (MQ=255) gcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCAcgg > 1:172807‑M1/21‑121 (MQ=255) gcgtgttttcacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTCCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCAcgg < 2:172807‑M1/101‑1 (MQ=255) ccccTGCAGCAACTGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccggagtgcctggacgactac < 1:51585‑M1/150‑133 (MQ=255) cacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATc > 1:259154‑M1/12‑150 (MQ=255) cacacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATc > 2:639960‑M1/12‑150 (MQ=255) acacagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCg < 2:403210‑M1/140‑1 (MQ=255) acagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTc > 2:204610‑M1/9‑150 (MQ=255) acagcctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTc < 1:214339‑M1/142‑1 (MQ=255) cctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCa < 1:749935‑M1/72‑1 (MQ=255) cctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCa > 2:749935‑M1/5‑76 (MQ=255) cctgGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGa > 2:671178‑M1/5‑150 (MQ=255) GGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCt < 1:169804‑M1/150‑1 (MQ=255) gTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttaca < 1:221889‑M1/108‑106 (MQ=255) gTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttaca > 2:221889‑M1/1‑3 (MQ=255) | ATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGACAGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCT > NC_002947/1843011‑1843298 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |