New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1843152	0 (0.000)	24 (0.780)	21/258	0.6	64.0%	coding (1684/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	2177745 =	27 (0.880)					intergenic (+103/‑63)	PP_5485/PP_1931	GNAT family acetyltransferase/hypothetical protein

GGTGTCACCACAGGTAACTCGCCTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGAT  >  NC_002947/2177603‑2177885                                                                                                                                               |                                                                                                                                             attggcagtggtaacgctcgagctgctgatgataatggcccagttgctcgggcgacaggttacccaggttggcaccgagcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACtgt                                                                                                                                       >  2:335688‑M2/143‑150 (MQ=255)    gtCACCACAGGTAACTCGCCTCCACGGACGTCTGTGAGTTAGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGATAGATGTCGAGATGAATCGACCTCGTTTTGGTAGCCACCTCGACCGGCTGCTAATGGTCCAGACtgtgtg                                                                                                                                    >  2:135598/1‑150 (MQ=255)         tggtaacgctcgagctgctgatgataatggcccagttgctcgggcgacaggttacccaggttggcaccgagcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAAc                                                                                                                               <  1:358665‑M2/16‑1 (MQ=255)                gctcgagctgctgatgataatggcccagttgctcgggctacaggttacccaggttggcaccgagcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCcgcg                                                                                                                        <  1:607355‑M2/23‑1 (MQ=255)                      ccTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTc                                                                                                                  >  2:207808/1‑150 (MQ=255)                                    aGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCCCGGTTGTCTAACCTTCTGgtcg                                                                                                    >  2:380649/1‑150 (MQ=255)                                      tGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGc                                                                                                                             >  2:87313/1‑123 (MQ=255)                                      tGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGc                                                                                                                             <  1:87313/123‑1 (MQ=255)                                       cccagttgctcgggcgacaggttacccaggttggcaccgagcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACtgtgt                                                                                                                                     >  2:43927‑M2/105‑114 (MQ=255)                                       cccagttgctcgggcgacaggttacccaggttggcaccgagcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACtgtgt                                                                                                                                     <  1:43927‑M2/10‑1 (MQ=255)                                       cccagttgctcgggcgacaggttacccaggttggcaccgagcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGtcgtcg                                                                                                 >  1:463808‑M2/105‑150 (MQ=255)                                          ttcgttcTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGa                                                                                              >  1:506641/1‑150 (MQ=255)                                                 tcAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGACCTGAATCGACCTCGTTTTGGTAGGCACCGCGAACGTCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTggg                                                                                       <  1:56806/150‑1 (MQ=255)                                                 cgggcgacaggttacccaggttggcaccgagcaccgcgacctcgaagcgaagtccggcctggctggctgcctgccccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTggg                                                                                       <  1:181914‑M2/56‑1 (MQ=255)                                                     gtgtCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGa                                                                                     <  1:267061/148‑1 (MQ=255)                                                     gtgtCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGa                                                                                     >  2:267061/1‑148 (MQ=255)                                                           gttacccaggttggcaccgagcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACtgtgt                                                                                                                                     <  2:241763‑M2/10‑1 (MQ=255)                                                           gttacccaggttggcaccgagcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACtgtgt                                                                                                                                     >  1:241763‑M2/85‑94 (MQ=255)                                                           gttacccaggttggcaccgagcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATg                                                                             <  1:183359‑M2/66‑1 (MQ=255)                                                           cAGGAACGAGTCCTGCGCCCCCCGAAAGATGTAAAACTGAATCAACCTCGTTTTCGTAGACACATCGAACGGCTGCAAAGGGTCCAGACTGTGAGAAAACGCCCGCGGTTGTCTAACCTACTGGTCGTAGTGACCGTGGGTACAATCATg                                                                             >  2:281718/1‑150 (MQ=255)                                                            ttacccaggttggcaccgagcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGa                                                                            <  2:463808‑M2/67‑1 (MQ=255)                                                                ccaggttggcaccgagcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCg                                                                        >  1:487750‑M2/80‑150 (MQ=255)                                                                     ttggcaccgagcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCa                                                                   >  2:447481‑M2/75‑150 (MQ=255)                                                                          accgagcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGaa                                                              >  1:542739‑M2/70‑150 (MQ=255)                                                                           ccgagcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAg                                                             <  2:25144‑M2/82‑1 (MQ=255)                                                                            cgagcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAgg                                                            >  1:480494‑M2/68‑150 (MQ=255)                                                                               gcaccgcgaactcgaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGa                                                         <  2:480494‑M2/86‑1 (MQ=255)                                                                                          tCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGc                                              >  1:662536/1‑150 (MQ=255)                                                                                            gaagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAg                                            <  1:447481‑M2/99‑1 (MQ=255)                                                                                            gAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAg                                            >  1:228867/1‑150 (MQ=255)                                                                                             aagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGa                                                         <  2:403622‑M2/86‑1 (MQ=255)                                                                                             aagggcaggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGa                                                         >  1:403622‑M2/51‑136 (MQ=255)                                                                                                  caggccggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACa                                      <  1:335688‑M2/105‑1 (MQ=255)                                                                                                       cggcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATtgct                                 >  2:165760‑M2/41‑150 (MQ=255)                                                                                                       aCCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGCGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATtgct                                 >  2:48789/1‑150 (MQ=255)                                                                                                        ccTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATtgctg                                >  1:701343/1‑150 (MQ=255)                                                                                                        ccTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATtgctg                                >  1:279257/1‑150 (MQ=255)                                                                                                         gcctggctggcggcctgcaccccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATtgctgc                               >  1:27713‑M2/39‑150 (MQ=255)                                                                                                          tCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAAcc                                                                                                             <  2:671103/71‑1 (MQ=255)                                                                                                          tCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAAcc                                                                                                             >  1:671103/1‑71 (MQ=255)                                                                                                                 cGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGc                       <  1:413951/150‑1 (MQ=255)                                                                                                                  gtggACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACAtt                                    <  2:504605/133‑1 (MQ=255)                                                                                                                  gtggACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACAtt                                    >  1:504605/4‑136 (MQ=255)                                                                                                                   tAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCt                     <  1:207808/150‑1 (MQ=255)                                                                                                                   tAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCt                     >  1:337236/1‑150 (MQ=255)                                                                                                                          cTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGgacgac              >  1:256554/1‑150 (MQ=255)                                                                                                                             gAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCg                             <  1:237582/132‑1 (MQ=255)                                                                                                                             gAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCg                             >  2:237582/1‑132 (MQ=255)                                                                                                                             cccctgcagcaactggtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTAc           <  1:51585‑M2/132‑1 (MQ=255)                                                                                                                              aaCGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACg          <  1:211435/150‑1 (MQ=255)                                                                                                                                      cAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGAt  <  1:135598/150‑1 (MQ=255)                                                                                                                                            gtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACa                                      >  2:221889‑M2/4‑108 (MQ=255)                                                                                                                                            gtcCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACa                                      <  1:221889‑M2/105‑1 (MQ=255)                                                                                                                                               |                                                                                                                                             GGTGTCACCACAGGTAACTCGCCTCCACGGACGTCAGTGAGTTCGTTCTCAGGTGTCCCAGGAACGAGTCCTGCGCCCCCCGAAAGATGTCGAACTGAATCGACCTCGTTTTCGTAGACACCTCGAACGGCTGCAAAGGGTCCAGACTGTGTGAAAACGCCCGCGGTTGTCTAACCTTCTGGTCGTCGTGACCGTGGGGACAATCATGAAGCGATTCATCGAAGGTGAGGCTCGAACGCAGGTTACATTGCTGCCGGAGTGCCTGGACGACTACGTCACCGAT  >  NC_002947/2177603‑2177885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.