New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1899260 =	35 (1.110)	8 (0.290)	7/236	2.4	23.5%	intergenic (+288/‑232)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1899320 =	21 (0.750)					intergenic (+348/‑172)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase

CCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCC  >  NC_002947/1899188‑1899457                                                                                                                                     |                                                                                                                                          ccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGAGAGATGTATTCGCGCGGCTTTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCg                                                                                                                          <  2:21099/150‑1 (MQ=25)  cAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCgg                                                                                                                         >  1:613862/1‑150 (MQ=255)          cgcCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTg                                                                                                                 <  1:472161/150‑1 (MQ=255)           gcCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCTCTGTGGGAGCGGGCATGCCCGCTAAAGGGCCGGTATAGCTgg                                                                                                                <  2:70299/150‑1 (MQ=255)                      tGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTg                                                                                                     <  1:78156/150‑1 (MQ=255)                      tGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTGGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTg                                                                                                     <  2:65345/150‑1 (MQ=255)                       gAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACCGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGc                                                                                                    <  1:139745/150‑1 (MQ=255)                          gTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGa                                                                                                 >  1:422091/1‑150 (MQ=255)                               cACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTAc                                                                                            >  2:641605/1‑150 (MQ=255)                                             tAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTg                                                                              >  1:40220/1‑150 (MQ=255)                                              aaCCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGt                                                                             <  1:529661/150‑1 (MQ=255)                                               aCCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTc                                                                            <  1:641605/150‑1 (MQ=255)                                                         gCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAAc                                                                         >  1:127197/1‑143 (MQ=255)                                                         gCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAAc                                                                         <  2:127197/143‑1 (MQ=255)                                                            tctTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGcc                                                               <  1:239157/150‑1 (MQ=255)                                                              ttCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATccc                                                                                    >  1:56005/1‑127 (MQ=255)                                                              ttCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATccc                                                                                    <  2:56005/127‑1 (MQ=255)                                                               tCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCGACGTTGACAGcccgg                                                            <  2:422091/150‑3 (MQ=255)                                                                     gCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGc                                                                                                               <  1:166411/93‑1 (MQ=255)                                                                     gCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGc                                                                                                               >  2:166411/1‑93 (MQ=255)                                                                       aCGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTc                                                    >  2:457996/1‑150 (MQ=255)                                                                           CCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGa                                                <  1:311846‑M1/150‑1 (MQ=255)                                                                             GCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAg                                                                                                                    <  1:49621‑M1/80‑1 (MQ=255)                                                                             GCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAg                                                                                                                    >  2:49621‑M1/1‑80 (MQ=255)                                                                               tcccacagggatatcgcaaggcctgagggcggcgcagtacctgtgggagcgggcGTGCCCGCGAAGAGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACaaa                                            >  2:300296‑M2/55‑150 (MQ=255)                                                                                  cacagggatatcgcaaggcctgagggcggcgcagtacctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTAc                                                                                            >  1:523422‑M2/52‑99 (MQ=255)                                                                                  cacagggatatcgcaaggcctgagggcggcgcagtacctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTAc                                                                                            <  2:523422‑M2/48‑1 (MQ=255)                                                                                   ACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGTGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTACTGATCTACCTCATCCCGGGCTGTCAACGTTGACAGCCCTCACCACTTCACGACAAAGgcg                                        <  1:661007‑M1/150‑1 (MQ=255)                                                                                       ggatatcgcaaggcctgagggcggcgcagtacctgtgggagcgggcGTGCCCGCGAAGAGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCgt                                    <  1:300296‑M2/104‑1 (MQ=255)                                                                                       GTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGt                                    <  1:529546‑M1/150‑1 (MQ=255)                                                                                                aaggcctgagggcggcgcagtacctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCAt                                                                                                           <  2:104352‑M2/33‑1 (MQ=255)                                                                                                aaggcctgagggcggcgcagtacctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCAt                                                                                                           >  1:104352‑M2/38‑70 (MQ=255)                                                                                                aaggcctgagggcggcgcagtacctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCg                           >  2:196433‑M2/38‑150 (MQ=255)                                                                                                           gcggcgcagtacctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGc                <  1:196433‑M2/124‑1 (MQ=255)                                                                                                                       ctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCGCCGCTTGCATCAGCATGCCGGGGCAg    >  2:377047‑M2/15‑150 (MQ=255)                                                                                                                         gtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGcc  <  2:40220‑M2/138‑1 (MQ=255)                                                                                                                         cctttcgcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGcc  >  1:739479‑M2/13‑150 (MQ=255)                                                                                                                                     aTGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGc                <  2:380045/124‑1 (MQ=255)                                                                                                                                     aTGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGc                >  1:380045/1‑124 (MQ=255)                                                                                                                                     |                                                                                                                                          CCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCTGTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCC  >  NC_002947/1899188‑1899457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.