| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4641032 | 29 (0.790) | 7 (0.210) | 7/248 | 3.0 | 20.8% | coding (817/1383 nt) | gabP‑IV | gamma‑aminobutyrate permease |
| ? | NC_002947 | = 4641048 | 27 (0.810) | coding (801/1383 nt) | gabP‑IV | gamma‑aminobutyrate permease | |||||
CCAGCGAATAGAGCATGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4640897‑4641032‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggaacgacccCGGGCTCAAAGCGGTAGGGTCGTTCCAGCGTGTACTGGAAGTGCTGAACGTGCCGGGCGCCAAGTTGCTGGTTGACCTGGTGGTGCTGGTGGCGGTGACAAGTTGCATGAACTCGGGGCTCTACACGGCGTC < NC_002947/4641048‑4640917 CCAGCGAATAGAGCATGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTG > 1:94498/1‑127CCAGCGAATAGAGCATGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTG < 2:94498/127‑1 AGCGAATAGAGCATGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCCGGGCTCAAAGCGGTA > 2:167863/1‑150 GAATAGAGCATGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCCGGGCTCAAAGCGGTAGGG < 1:407427/150‑1 GAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCCGGGCTCAAAGCGGTAGGGTCGTTCCAGCGTGTACTGGAAGTGCT < 1:167863/150‑1 CGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCCGGGCTCAAAGCGGTAGGGTCGTTCCAGC < 1:809036/128‑1 CGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCCGGGCTCAAAGCGGTAGGGTCGTTCCAGC > 2:809036/1‑128 AGCACTTCCAGTACACGCTGGAACGACCCCGGGCTCAAAGCGGTAGGGTC < 1:36675/50‑1 AGCACTTCCAGTACACGCTGGAACGACCCCGGGCTCAAAGCGGTAGGGTC > 2:36675/1‑50 CTGGAACGACCCCGGGCTCAAAGCGGTAGGGTCGTTCCAGCGTGTACTGGAAGTGCTGAACGTGCCGGGCGCCAAGTTGCTGGTTGACCTGGTGGTGCTGGTGGCGGTGACAAGTTGCATGAACTCGGGGCTCTACACGGCGTC < 1:395478/144‑1 CTGGAACGACCCCGGGCTCAAAGCGGTAGGGTCGTTCCAGCGTGTACTGGAAGTGCTGAACGTGCCGGGCGCCAAGTTGCTGGTTGACCTGGTGGTGCTGGTGGCGGTGACAAGTTGCATGAACTCGGGGCTCTACACGGCGTC > 2:395478/1‑144 CCAGCGAATAGAGCATGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4640897‑4641032‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggaacgacccCGGGCTCAAAGCGGTAGGGTCGTTCCAGCGTGTACTGGAAGTGCTGAACGTGCCGGGCGCCAAGTTGCTGGTTGACCTGGTGGTGCTGGTGGCGGTGACAAGTTGCATGAACTCGGGGCTCTACACGGCGTC < NC_002947/4641048‑4640917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |