New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4641032	29 (0.790)	7 (0.210)	7/248	3.0	20.8%	coding (817/1383 nt)	gabP‑IV	gamma‑aminobutyrate permease
	?	NC_002947	= 4641048	27 (0.810)					coding (801/1383 nt)	gabP‑IV	gamma‑aminobutyrate permease

TGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTACACCACCAGGTTGGTGGCGCGGCGAATCTTGTCTTTCGGGTTGGCGGTTTCGTCAGCCGCGATGGTGACAATTTC  >  NC_002947/4640912‑4641191                                                                                                                                         |                                                                                                                                                tGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAgg                                                                                                                                    >  1:709869/1‑150 (MQ=255)      gACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGgggtcgttccag                                                                                                                                     >  2:395478‑M2/1‑132 (MQ=255)      gACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGgggtcgttccag                                                                                                                                     <  1:395478‑M2/144‑13 (MQ=255)             tgtAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGaca                                                                                                                        >  2:85933/1‑150 (MQ=255)                 gagCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGAcaccac                                                                                                                    >  2:829860/1‑150 (MQ=255)                    ccccGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAg                                                                                                                 <  2:75880/150‑1 (MQ=255)                           ttCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGCACACGCTCCAACGATCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATc                                                                                                          <  2:446993/150‑1 (MQ=255)                                          aCCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTagaag                                                                                           >  2:82711/1‑150 (MQ=255)                                              ccaccaGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATgg                                                                                       >  1:663818/1‑150 (MQ=255)                                              ccaccaGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATgg                                                                                       >  1:631133/1‑150 (MQ=255)                                                           caGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTacac                                                                          <  1:548049/150‑1 (MQ=255)                                                           caGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTacac                                                                          <  2:663818/150‑1 (MQ=255)                                                              gTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTAcaccac                                                                       >  1:586763/1‑150 (MQ=255)                                                                 aaCCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTACACCACCAg                                                                    >  2:591943/1‑150 (MQ=255)                                                                  aCCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTACAccacca                                                                     <  2:134334/148‑1 (MQ=255)                                                                  aCCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTACAccacca                                                                     >  1:134334/1‑148 (MQ=255)                                                                      gCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTACACCACCAGGTtgg                                                               >  1:317799/1‑150 (MQ=255)                                                                           ttGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTACACCACCAGGTTGGTGgcg                                                          >  2:836972/1‑150 (MQ=255)                                                                                   cGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTACACCACCAGGTTGGTGGCGCGGCGAAt                                                  <  1:836972/150‑1 (MQ=255)                                                                                         gTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTACACCACCAGGTTGGTGGCGCGGCGAATCTTGTc                                            >  1:261022/1‑150 (MQ=255)                                                                                             aGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGgggtcgttccagcgtgtactggaagtgctgaacgtgccgggcgccaagttgctggttgacctggtggtgctggtggcggtgacaagttgcatgaactcggggctc                                        <  1:167863‑M2/150‑106 (MQ=255)                                                                                                aCTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGCCGACTAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTACACCACCAGGTTGGTGGCGCGGCGAATCTTGTCTTTCggg                                     <  1:9599/150‑1 (MQ=255)                                                                                                       gTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTACACCACCAGGTTGGTGGCGCGGCGAATCTTGTCTTTCGGGTTGGCgg                              <  1:829860/150‑1 (MQ=255)                                                                                                             gCTGGAACGACCCTACCGCTTTGAGCCCGgggtcgttccagcgtgtactggaagtgctgaacgtgccgggcgccaagttgctggttgacctggtggtgctggtggcggtgacaagttgcatgaactcg                                              <  1:809036‑M2/128‑100 (MQ=255)                                                                                                             gCTGGAACGACCCTACCGCTTTGAGCCCGgggtcgttccagcgtgtactggaagtgctgaacgtgccgggcgccaagttgctggttgacctggtggtgctggtggcggtgacaagttgcatgaactcg                                              >  2:809036‑M2/1‑29 (MQ=255)                                                                                                              cTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTac                                                                            <  2:547360/97‑1 (MQ=255)                                                                                                              cTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTac                                                                            >  1:547360/1‑97 (MQ=255)                                                                                                                     gACCCTACCGCTTTGAGCCCGgggtcgttccagcgtgtactggaagtgct                                                                                                                    <  1:36675‑M2/50‑30 (MQ=255)                                                                                                                     gACCCTACCGCTTTGAGCCCGgggtcgttccagcgtgtactggaagtgct                                                                                                                    >  2:36675‑M2/1‑21 (MQ=255)                                                                                                                       cccTACCGCTTTGAGCCCGgggtcgttccagcgtgtactggaagtgctgaacgtgccgggcgccaagttgctggttgacctggtggtgctggtggcggtgacaagttgcatgaactcggggctctacacggcgtcgcgcatgctctattc              <  1:407427‑M2/150‑132 (MQ=255)                                                                                                                       cccTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTACACCACCAGGTTGGTGGCGCGGCGAATCTTGTCTTTCGGGTTGGCGGTTTCGTCAGCCGCGAt              <  1:591943/150‑1 (MQ=255)                                                                                                                          tACCGCTTTGAGCCCGgggtcgttccagcgtgtactggaagtgctgaacgtgccgggcgccaagttgctggttgacctggtggtgctggtggcggtgacaagttgcatgaactcggggctctacacggcgtcgcgcatgctctattcgct           >  2:167863‑M2/1‑16 (MQ=255)                                                                                                                          tACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTACACCACCAGGTTGGTGGCGCGGCGAATCTTGTCTTTCGGGTTGGCGGTTTCGTCAGCCGCGATGGt           <  1:82711/150‑1 (MQ=255)                                                                                                                                   gAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTACACCACCAGGTTGGTGGCGCGGCGAATCTTGTCTTTCGGGTTGGCGGTTTCGTCAGCCGCGATGGTGACAATTTc  <  2:709869/150‑1 (MQ=255)                                                                                                                                      cccGGGGTCGTTACAGGCGACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCg                                                                                <  1:393477/69‑1 (MQ=255)                                                                                                                                      cccGGGGTCGTTACAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCg                                                                                >  2:393477/1‑69 (MQ=255)                                                                                                                                         |                                                                                                                                                TGCGCGACGCCGTGTAGAGCCCCGAGTTCATGCAACTTGTCACCGCCACCAGCACCACCAGGTCAACCAGCAACTTGGCGCCCGGCACGTTCAGCACTTCCAGTACACGCTGGAACGACCCTACCGCTTTGAGCCCGGGGTCGTTCCAGGCCACCAGCGACACCACCAGGAAGATCGACGCCAGGTAGAAGATGGCGATGCGGTACACCACCAGGTTGGTGGCGCGGCGAATCTTGTCTTTCGGGTTGGCGGTTTCGTCAGCCGCGATGGTGACAATTTC  >  NC_002947/4640912‑4641191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.