New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1838113 =	40 (1.090)	9 (0.270)	7/252	3.0	20.7%	intergenic (+18/+86)	PP_1642/PP_1643	hypothetical protein/membrane protein
	?	NC_002947	1838195 =	32 (0.940)					intergenic (+100/+4)	PP_1642/PP_1643	hypothetical protein/membrane protein

GGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGC  >  NC_002947/1838046‑1838341                                                                                                                                                      |                                                                                                                                                   ggcCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGaaa                                                                                                                                                    >  2:844294/1‑150 (MQ=255)  gcCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGaaaa                                                                                                                                                   <  1:82907/150‑1 (MQ=255)    cGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAAt                                                                                                                                                 >  2:330664/1‑150 (MQ=255)                 gTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGCAATTGCACCGCACTTAAGGCCTGTGCAGTACCGGTGGGAGGGGGCGTGCCCGCGAAAAATCTAACTGCCTTcg                                                                                                                                    >  1:290032/1‑150 (MQ=255)                    ggTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTcgccc                                                                                                                                 >  2:21947/1‑150 (MQ=255)                           cTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATgc                                                                                                                          <  1:330664/150‑1 (MQ=255)                               cgcACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGcgccg                                                                                                                      <  1:844294/150‑1 (MQ=255)                                  acacCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTc                                                                                                                   >  2:500269/1‑150 (MQ=255)                                            ccATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTcgcccgc                                                                                                                               >  2:352950/1‑128 (MQ=255)                                            ccATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTcgcccgc                                                                                                                               <  1:352950/128‑1 (MQ=255)                                                  aGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTcg                                                                                                                                    >  2:634354/1‑117 (MQ=255)                                                  aGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTcg                                                                                                                                    <  1:634354/117‑1 (MQ=255)                                                  aGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATgcgc                                                                                                                        >  1:753830/1‑129 (MQ=255)                                                  aGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATgcgc                                                                                                                        <  2:753830/129‑1 (MQ=255)                                                      ttGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCa                                                                                               >  2:290185/1‑150 (MQ=255)                                                      ttGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCa                                                                                               <  1:21947/150‑1 (MQ=255)                                                               tCCCATTCGCGGGCATGCCCGCTACCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACGGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTa                                                                                      >  1:863843/1‑150 (MQ=255)                                                                    TTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCg                                                                                 >  1:290185‑M1/1‑150 (MQ=255)                                                                       GCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCa                                                                              <  1:162469‑M1/150‑1 (MQ=255)                                                                        CGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCaa                                                                             >  2:309239‑M1/1‑150 (MQ=255)                                                                         gggcacgcccgctcccacaggtactgcacaggccttaagtgcggtgcgattactgtgggagcgggcatgcccgcgaaAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTc                                                                                                      <  2:460474‑M2/47‑1 (MQ=255)                                                                         gggcacgcccgctcccacaggtactgcacaggccttaagtgcggtgcgattactgtgggagcgggcatgcccgcgaaAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTc                                                                                                      >  1:460474‑M2/78‑124 (MQ=255)                                                                         GGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAAt                                                                            >  1:806819‑M1/1‑150 (MQ=255)                                                                            CATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGaa                                                                         >  1:671490‑M1/1‑150 (MQ=255)                                                                             ATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTc                                                                                                                                     <  2:717512‑M1/89‑1 (MQ=255)                                                                             ATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTc                                                                                                                                     >  1:717512‑M1/1‑89 (MQ=255)                                                                                cccgctcccacaggtactgcacaggccttaagtgcggtgcgattactgtgggagcgggcatgcccgcgaaAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAAc                                                                                                         >  2:847378‑M2/71‑114 (MQ=255)                                                                                cccgctcccacaggtactgcacaggccttaagtgcggtgcgattactgtgggagcgggcatgcccgcgaaAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAAc                                                                                                         <  1:847378‑M2/44‑1 (MQ=255)                                                                                cccGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAAc                                                                        >  2:624667/1‑147 (MQ=255)                                                                                cccGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAAc                                                                        <  1:624667/147‑1 (MQ=255)                                                                                cccGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGc                                                                     >  1:174927/1‑150 (MQ=255)                                                                                     tcccacaggtactgcacaggccttaagtgcggtgcgattactgtgggagcgggcgtgcccgcgaaAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGACAAGCCCCAg                                                                >  1:106940‑M2/66‑150 (MQ=255)                                                                                     tcccacaggtactgcacaggccttaagtgcggtgcgattactgtgggagcgggcgtgcccgcgaaAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAg                                                                >  2:59149‑M2/66‑150 (MQ=255)                                                                                     tcccacaggtactgcacaggccttaagtgcggtgcgattactgtgggagcgggcgtgcccgcgaaAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCAAg                                                                >  1:680436‑M2/66‑150 (MQ=255)                                                                                        cacaGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCa                                                                                                    <  1:595343/111‑1 (MQ=255)                                                                                        cacaGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCa                                                                                                    >  2:595343/1‑111 (MQ=255)                                                                                        cacaGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCt                                                             >  1:270612/1‑150 (MQ=255)                                                                                        cacaGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCt                                                             >  1:425208/1‑150 (MQ=255)                                                                                         acaggtactgcacaggccttaagtgcggtgcgattactgtgggagcgggcatgcccgcgaaAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTa                                                                                           >  1:389915‑M2/62‑119 (MQ=255)                                                                                         acaggtactgcacaggccttaagtgcggtgcgattactgtgggagcgggcatgcccgcgaaAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTa                                                                                           <  2:389915‑M2/58‑1 (MQ=255)                                                                                           aGTAATCGCACCGCACTTCAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCAc                                                          <  1:500269/150‑1 (MQ=255)                                                                                                      cgcacTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCaa                                               <  1:823747/150‑1 (MQ=255)                                                                                                      cgcacTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCaa                                               >  2:543722/1‑150 (MQ=255)                                                                                                        cacTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAagc                                             <  2:162469/150‑1 (MQ=255)                                                                                                                 ccTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAAt                                    >  1:448652/1‑150 (MQ=255)                                                                                                                               gtgGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCgg                      <  2:425208/150‑1 (MQ=255)                                                                                                                                     gCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGaa                <  2:290032/150‑1 (MQ=255)                                                                                                                                     gCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGaa                >  2:210319/1‑150 (MQ=255)                                                                                                                                               ccgcgaaAAATCTAACTGCCTTCGCCCGCCATGCGCCTCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGc      >  1:832960‑M2/8‑150 (MQ=255)                                                                                                                                               ccgcgaaAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGc      >  1:647580‑M2/8‑150 (MQ=255)                                                                                                                                                cgcgaaAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGAGAGGCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCa     >  1:641989‑M2/7‑150 (MQ=255)                                                                                                                                                   gaaAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGc  >  2:447108‑M2/4‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGCCCGCCATGCGCCGCTCATGCTGGAACTTCCAGCGCACGTACAGTAGCCCGGCAATGAACAGCCCCAGGCTCACCAGCACTTCAAGCCAGCCGAATACCGCCCGCGCCGGGTCGAACGCCGCCAGCACGC  >  NC_002947/1838046‑1838341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.