| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 178558 | NA (NA) | 10 (0.140) | 6/238 | NT | 77.7% | intergenic (+218/‑75) | PP_16SB/PP_23SB | 16S ribosomal RNA/23S ribosomal RNA |
| ? | NC_002947 | = 699793 | 3 (0.040) | intergenic (+183/‑61) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA | |||||
TGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCtgctc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/178410‑178558‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCTCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGAGCT‑GAATGTTCATTTCTAAG < NC_002947/699793‑699640 TGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCT > 1:1605092/1‑150TGGTCAGAACCTGGAAATGAGCATTCGTATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCT > 2:1113647/1‑150TGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCT > 2:1136745/1‑150TGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTCTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCT > 2:199900/1‑150 TCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCT < 2:1555664/150‑1 TGGAAATGAGCATTCGCATCGAATGTCGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCTTTCGAG < 1:1278056/150‑1 ATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCTTTCGAGCAGAA < 2:617987/150‑1 tTCGAATGTTGATTTCTGACTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTCGTACGT‑‑TGCTCTTTCGAGCAGAACTCACAAATTTTAC < 2:169507/149‑1 TGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGATTTCTGC < 1:133619/108‑1 TGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGATTTCTGC > 2:133619/1‑108 TTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGC < 1:1254051/104‑1 TTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGC > 2:1254051/1‑104 TTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCTTTCGAGCAGAACTCA > 1:1053804/1‑105 TTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCTTTCGAGCAGAACTCA < 2:1053804/105‑1 GACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTCGTACGT‑‑TGCTCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCAC < 2:40168/100‑1 GACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTCGTACGT‑‑TGCTCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCAC > 1:40168/1‑100 TGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGCCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAA > 1:567715/1‑150 GGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAG > 1:1102032/1‑150 GGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGCCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAG < 2:567715/150‑1 TGCTCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGAGCT‑GAATGTTCATTTC > 2:131909/1‑150 TCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGAGCT‑GAATGTTCATTTCTAA > 1:433120/1‑150 TCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAAAATTCGAGCT‑GTATTTTCATTTCTAA > 1:1197500/1‑150 TCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGCCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGAGCT‑GAATGTTCATTTCTAA > 2:773221/1‑150 CTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGCCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTC‑AGCTCGAATGTTGATTTCTggc < 2:1162842/150‑4 TGGTCAGAACCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCtgctc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/178410‑178558‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCTCTTTCGAGCAGAACTCACAAATTTTACCTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGAGCT‑GAATGTTCATTTCTAAG < NC_002947/699793‑699640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |