| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 178558 | NA (NA) | 10 (0.140) | 6/238 | NT | 77.7% | intergenic (+218/‑75) | PP_16SB/PP_23SB | 16S ribosomal RNA/23S ribosomal RNA |
| ? | NC_002947 | = 699793 | 3 (0.040) | intergenic (+183/‑61) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA | |||||
GAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCGGCGAATGTCGTCTTCACAGTATAACCAGATTGCTTGGGGTTATATGGTCAAGTGAAGAAGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGATAAGCTTTGGGGAGTCGG > NC_002947/699644‑699942 | gAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCA > 2:131909‑M2/1‑150 (MQ=255) aaaTGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCaa > 2:628292/1‑150 (MQ=35) aaaTGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCaa < 2:1368483/150‑1 (MQ=35) tGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAAc < 2:30019/148‑1 (MQ=21) tGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAAc > 1:30019/1‑148 (MQ=25) gAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTa < 1:393599/150‑1 (MQ=25) aaCATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTCTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTAc > 2:1591540/1‑150 (MQ=255) aGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAAtttt > 1:364751/1‑150 (MQ=32) gCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTc < 1:963394/150‑1 (MQ=31) cTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCTTTCGAGCAgaactcacaaattttaccttagcctgatcc < 2:567715‑M2/150‑31 (MQ=255) cTGACTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCTTTCGAGCAgaactcacaaattttaccttagcctgatcc > 1:1102032‑M2/1‑120 (MQ=255) ttGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCTTTCGAGCAgaactcacaaattttaccttagcctgatccaccagca > 1:567715‑M2/1‑113 (MQ=255) gtggATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAacgtacgaattttaccttagcctgatccaccagcagtgaaactggtgttcagtc < 2:40168‑M2/100‑55 (MQ=255) gtggATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAacgtacgaattttaccttagcctgatccaccagcagtgaaactggtgttcagtc > 1:40168‑M2/1‑46 (MQ=255) gTAAAATTTGTGAGTTCTGCTCGAAAGAGCAacgtacgaattttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagtcagaaatcaacattcgaa < 2:169507‑M2/150‑120 (MQ=255) tgAGTTCTGCTCGAAAGAGCAgaactcacaaattttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaa < 2:1053804‑M2/105‑85 (MQ=255) tgAGTTCTGCTCGAAAGAGCAgaactcacaaattttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaa > 1:1053804‑M2/1‑21 (MQ=255) ttCTGCTCGAAAGAGCAgaactcacaaattttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcat < 2:617987‑M2/150‑134 (MQ=255) cTCGAAAGAGCAgaactcacaaattttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcgacattcgatgcgaatgctcatttcca < 1:1278056‑M2/150‑139 (MQ=255) agCAgaactcacaaattttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctga < 2:1555664‑M2/150‑147 (MQ=255) gCAgaactcacaaattttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaa > 2:1254051‑M2/1‑3 (MQ=255) gCAgaactcacaaattttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaa < 1:1254051‑M2/104‑102 (MQ=255) gCAgaaatcacaaattttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagcca > 2:133619‑M2/1‑3 (MQ=255) gCAgaaatcacaaattttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagcca < 1:133619‑M2/108‑106 (MQ=255) agaactcacaaattttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttagagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctgacca > 2:199900‑M2/1‑1 (MQ=255) agaactcacaaattttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatgcgaatgctcatttccaggttctgacca > 2:1136745‑M2/1‑1 (MQ=255) agaactcacaaattttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatacgaatgctcatttccaggttctgacca > 1:1605092‑M2/1‑1 (MQ=255) agaactcacaaattttaccttagcctgatccaccagcagtgaaactggtgttcagtctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgatacgaatgctcatttccaggttctgacca > 2:1113647‑M2/1‑1 (MQ=255) | GAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCGGCGAATGTCGTCTTCACAGTATAACCAGATTGCTTGGGGTTATATGGTCAAGTGAAGAAGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGATAAGCTTTGGGGAGTCGG > NC_002947/699644‑699942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |