New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	250495 =	70 (0.960)	3 (0.040)	3/236	NT	5.1%	coding (708/1347 nt)	nfeD	membrane bound peptidase NefD
	?	NC_002947	250540 =	46 (0.660)					coding (663/1347 nt)	nfeD	membrane bound peptidase NefD

CGCCAGCGAGGCCTTGCGCCTGAACGTGATCGATCAGGTGGCCGATGACCTGCCTGACCTGCTGCGCAAGCTCGACGGCAAAACGCTTCAGGTGGCCGGCCAACCACGGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/250645‑250495 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTGATCGATCACGTTCAGGCGCAAGGCCTCGCTGGCGGACAGGCTGACCGCCTCGCGCACGGCCTTCTCCGCCCAGTCGG  >  NC_002947/250540‑250688                                                                                                                                                                                                                                                                                                              CGCCAGCGAGGCCTTGCGCCTGAACGTGATCGATCAGGTGGCCGATGACCTGCCTGACCTGCTGCGCAAGCTCGACGGCAAAACGCTTCAGGTGGCCGGCCAACCACGGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGCC                                                                                                                                                        >  1:1348245/1‑150 CGCCAGCGAGGCCTTGCGCCTGAACGTGATCGATCAGGTGGCCGATGACCTGCCTGACCTGCTGCGCAAGCTCGACGGCAAAACGCTTCAGGTGGCCGGCCAACCACGGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGCC                                                                                                                                                        >  1:340508/1‑150 CGCCAGCGAGGCCTTGCGCCTGAACGTGATCGATCAGGTGGCCGATGACCTGCCTGACCTGCTGCGCAAGCTCGACGGCAAAACGCTTCAGGTGGCCGGCCAACCACGGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGCC                                                                                                                                                        <  1:522824/150‑1 CGCCAGCGAGGCCTTGCGCCTGAACGTGATCGATCAGGTGGCCGATGACCTGCCTGACCTGCTGCGCAAGCTCGACGGCAAAACGCTTCAGGTGGCCGGCCAACCACGGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGCC                                                                                                                                                        <  2:1140780/150‑1                      GAACGTGATCGATCAGGTGGCCGATGACCTGCCTGACCTGCTGCGCAAGCTCGACGGCAAAACGCTTCAGGTGGCCGGCCAACCACGGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGC                                                                                                                                                         >  1:561712/1‑128                      GAACGTGATCGATCAGGTGGCCGATGACCTGCCTGACCTGCTGCGCAAGCTCGACGGCAAAACGCTTCAGGTGGCCGGCCAACCACGGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGC                                                                                                                                                         <  2:561712/128‑1                                                  CTGCCTGACCTGCTGCGCAAGCTCGACGGCAAAACGCTTCAGGTGGCCGGCCAACCACGGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGCCG                                                                                                                                                       <  1:70543/102‑1                                                  CTGCCTGACCTGCTGCGCAAGCTCGACGGCAAAACGCTTCAGGTGGCCGGCCAACCACGGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGCCG                                                                                                                                                       >  2:70543/1‑102                                                                  GCAAGCTCGACGGCAAAACGCTTCAGGTGGCCGGCCAACCACGGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGC                                                                                                                                                         >  1:719409/1‑84                                                                  GCAAGCTCGACGGCAAAACGCTTCAGGTGGCCGGCCAACCACGGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGC                                                                                                                                                         >  1:720012/1‑84                                                                  GCAAGCTCGACGGCAAAACGCTTCAGGTGGCCGGCCAACCACGGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGC                                                                                                                                                         <  2:719409/84‑1                                                                  GCAAGCTCGACGGCAAAACGCTTCAGGTGGCCGGCCAACCACGGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGC                                                                                                                                                         <  2:720012/84‑1                                                                                                         CACGGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTGATCGATCACGTTCAGGCGCAAGGCCTCGCTG                                                >  1:1804172/1‑150                                                                                                            GGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTGATCGATCACGTTCAG                                                                >  1:892104/1‑131                                                                                                            GGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTGATCGATCACGTTCAG                                                                <  2:892104/131‑1                                                                                                                                                       GTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAAACACGTGAACGGCCACCTGTGAAAGGAGGTGCAGGCGCAAGGCCTCGCTGGCGGACAGGCTGACCGCCTCGCGCACGGCCTTCTCCGCCCAGTCGG  >  1:1205134/1‑150                                                                                                                                                                                                                                                                                                              CGCCAGCGAGGCCTTGCGCCTGAACGTGATCGATCAGGTGGCCGATGACCTGCCTGACCTGCTGCGCAAGCTCGACGGCAAAACGCTTCAGGTGGCCGGCCAACCACGGCAGTTGCAGACCGCAGGCGCCAGCGTGGTCGAGCATCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/250645‑250495 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTGATCGATCACGTTCAGGCGCAAGGCCTCGCTGGCGGACAGGCTGACCGCCTCGCGCACGGCCTTCTCCGCCCAGTCGG  >  NC_002947/250540‑250688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.