New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	321952 =	84 (1.150)	4 (0.060)	4/234	NT	5.0%	intergenic (+237/+221)	aguA/PP_0267	agmatine deiminase/ferric siderophore receptor
	?	NC_002947	321978 =	72 (1.050)					intergenic (+263/+195)	aguA/PP_0267	agmatine deiminase/ferric siderophore receptor

ATCAGTGCCACACCGCCATCAGCGCCTGCATCTCTGCTTCGCTGATCAACCCTTGGGGGTATCGCCCGGCAAGCAGACGTCGTGGGTCGGTCGTCCTGACCCTGATGCTTCCATGGTGTTTCAACCGCTTCGCCAAAAGCCTGAGCGATTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/322106‑321952 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggcgaAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGC  >  NC_002947/321978‑322125                                                                                                                                                                                                                                                                                                                 ATCAGTGCCACACCGCCATCAGCGCCTGCATCTCTGCTTCGCTGATCAACCCTTGGGGGTATCGCCCGGCAAGCAGACGTCGTGGGTCGGTCGTCCTGACCCTGATGCTTCCATGGTGTTTCAACCGCTTCGCCAAAAGCCTGAGCGATT                                                                                                                                                           >  1:473486/1‑150                                       TCGCTGATCAACCCTTGGGGGTATCGCCCGGCAAGCAGACGTCGTGGGTCGGTCGTCCTGACCCTGATGCTTCCATGGTGTTTCAACCGCTTCGCCAATCGCTCAGGCTTTTGGCGAAGCGGTTGAAACACCATGGAAGCATCAGGGTCA                                                                                                                     <  2:1136941/150‑1                                                                                                                               GCTTCGCCAAAAGCCTGAGCGATTGGCGAAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTG                             >  2:1338997/1‑150                                                                                                                                CTTCGCCAAAAGCCTGAGCGATTGGCGAAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGAC                                                                                                              <  1:469439/68‑1                                                                                                                                CTTCGCCAAAAGCCTGAGCGATTGGCGAAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGAC                                                                                                              >  2:469439/1‑68                                                                                                                                                        GCGAAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCT    <  1:1136941/150‑1                                                                                                                                                        GCGAAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCT    <  2:280757/150‑1                                                                                                                                                          GAAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGC  <  1:1352793/150‑1                                                                                                                                                          GAAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGC  <  2:207856/150‑1                                                                                                                                                                                                                                                                                                                 ATCAGTGCCACACCGCCATCAGCGCCTGCATCTCTGCTTCGCTGATCAACCCTTGGGGGTATCGCCCGGCAAGCAGACGTCGTGGGTCGGTCGTCCTGACCCTGATGCTTCCATGGTGTTTCAACCGCTTCGCCAAAAGCCTGAGCGATTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/322106‑321952 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggcgaAGCGGTTGAAACACCATGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGC  >  NC_002947/321978‑322125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.