| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 414024 | 86 (1.180) | 7 (0.120) | 6/192 | NT | 9.4% | intergenic (+41/‑162) | glnE/waaF | glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II |
| ? | NC_002947 | = 414054 | 69 (1.220) | intergenic (+71/‑132) | glnE/waaF | glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II | |||||
TGAAGTGTACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/413848‑414024‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattcgcgggcaagcccgctcccacaggGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGCCGCACTTCACGGCGTTCATCGGCAAACTGTGCCGCATCGATCACCCC < NC_002947/414054‑413906 TGAAGTGTACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTT > 2:1399413/1‑150 TACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCG > 2:436044/1‑150 TACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCG > 1:1924080/1‑150 ACACAGCGTTCTGCGCGGCCTCCCACAGACAGGCCCGGCAGAAGGAGGCCGGGGTGATCGATGCGGGACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGG < 2:244471/150‑1 ACAAAGCGTTCCGCTCGGCCTCCCACCGGCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGG < 2:377617/150‑1 ACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGG < 1:1212548/150‑1 AAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGC > 2:642717/1‑150 TTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCC > 2:204781/1‑150 GCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTC > 2:1938505/1‑150 GCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTC > 1:994680/1‑150 GCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTC > 1:432817/1‑150 CCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAA < 2:504506/126‑1 CCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAA > 1:504506/1‑126 CCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTATTGCACACTGCTC > 2:916388/1‑150 TGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCCGT < 1:1938505/150‑1 TGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCG > 2:1472439/1‑95 TGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCG < 1:1472439/95‑1 TGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGT < 1:743882/150‑1 ATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAG > 2:822860/1‑112 ATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTCATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAG < 1:822860/112‑1 CGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGA < 1:916388/150‑1 CGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGA < 2:689139/150‑1 ATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAA < 1:1182035/94‑1 ATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAA > 2:1182035/1‑94 CGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAG < 1:231386/92‑1 CGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAG > 2:231386/1‑92 GATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGG < 1:877700/92‑1 GATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGG > 2:877700/1‑92 GAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCG < 1:1909536/101‑1 GAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCG > 2:1909536/1‑101 ATTCGCGGGCAAGCCCGCTCCCACAGGGATTGGCCATTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGCCGCACTTCACGGCGTTCATCG < 2:1609415/150‑1 GGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGCCGCACTTCACGGCGTTCATCGGCAAAC > 1:1151948/1‑150 CAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGCCGCACTTCACGGCGTTCATCGGCAAACTGT < 2:854119/150‑1 AAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGCCGCACTTCACGGCGTTCATCGGCAAACTGTG > 1:146653/1‑150 CCCGCTCCCACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGCCGCACTTCACGGCGTTCATCGGCAAACTGTGCCG < 1:1785791/150‑1 CCGCTCCCACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCCCCCCAGATCCGC < 2:826616/115‑1 CCGCTCCCACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGC > 1:826616/1‑115 CCACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGCCGCACTTCACGGCGTTCATCGGCAAACTGTGCCGCATCGAT < 1:1766659/150‑1 CCACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGCCGCACTTCACGGCGTTCATCGGCAAACTGTGCCGCATCGAT > 1:1815341/1‑150 CCACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGCCGCAATTAAAGGAGTTAATCGTACAACTGTGCCGCATCGAc > 2:1869190/1‑149 ACAGGGCTTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGCCGCACTTCACGGCGTTCATCGGCAAACTGTGCCGCATCGATCA > 1:204781/1‑150 ACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAG > 2:1489203/1‑80 ACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAG < 1:1489203/80‑1 ACAGGGATTACACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATC < 1:1799390/104‑1 ACAGGGATTACACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATC > 2:1799390/1‑104 CAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGCCGCACTTCACGGCGTTCATCGGCAAACTGTGCCGCATCGATCAC < 2:1151948/150‑1 CAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGC < 2:1315163/106‑1 CAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGC > 1:1315163/1‑106 GGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGCCGCACTTCACGGCGTTCATCGGCAAACTGTGCCGCATCGATCACCCC > 1:642717/1‑150 TGAAGTGTACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/413848‑414024‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattcgcgggcaagcccgctcccacaggGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGCCGCACTTCACGGCGTTCATCGGCAAACTGTGCCGCATCGATCACCCC < NC_002947/414054‑413906 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |