New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 562730	45 (0.620)	5 (0.070)	5/232	NT	9.9%	coding (453/621 nt)	rpsD	30S ribosomal protein S4
	?	NC_002947	= 562763	49 (0.720)					coding (486/621 nt)	rpsD	30S ribosomal protein S4

ACGTCGTTTACCGTATGGGCTTCGGCTCGACTCGTTCCGAGTCCCGTCAGCTGGTTTCGCACAAAGCGATCAGCGTCAACGGTAAGACTGTAAACATTCCATCCTACCAAGTTCGTCCGGGTGACGTGGTCGCAGTCCGCGAGAAATCGCTGG‑‑‑‑‑‑‑GC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/562576‑562730 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgg‑‑‑‑‑‑‑gcGCACAGTTCAAGGGCTTGAACAATGCGCAACTGGCCCAGCGATTTCTCGCGGACTGCGACCACGTCACCCGGACGAACTTGGTAGGATGGAATGTTTACAGTCTTACCGTTGACGCTGATCGCTTTGTGCGAAACCAGCTGACGGGACT  <  NC_002947/562763‑562615                                                                                                                                                                                                                                                                                                                         ACGTCGTTTACCGTATGGGCTTCGGCTCGACTCGTTCCGAGTCCCGTCAGCTGGTTTCGCACAAAGCGATCAGCGTCAACGGTAAGACTGTAACCGGTCAGATCTGCCGAGTTCGTCCGGGTGACGTGGTCGCAGTCCGCGAGAAATCGC                                                                                                                                                                   >  2:544150/1‑150  CGTCGTTTACCGTATGGGCTTCGGCTCGCCTCGTTCCGAGTCCCGTCAGCACGGTTCGCACAAAGCGATCAGCGTCAACGGTAAGACTGTAAACATTCCATCCTACCAAGTTCGTCCGGGTGACGTGGTCGCAGTCCGCGAGAAATCGCT                                                                                                                                                                  <  1:1574403/150‑1   GTCGTTTACCGTATGGGCTTCGGCTCGACTCGTTCCGAGTCCCGTCAGCTGGTTTCGCACAAAGCGATCAGCGTCAACGGTAAGACTGTAAACATTCCATCCTACCAAGTTCGTCCGGGTGACGTGGTCGCAGTCCGCGAGAAATCGCTG                                                                                                                                                                 <  2:758659/150‑1   GTCGTTTAAAGAATGGGCTTCGGCTCGACTCGGTCCGAGTTCCGTCAGCTGGTTTCGCACAAAGCGATCAGCGTCAACGGTAAGACTGTAAACATTACATCCTACCAAGCTCGTTCTGGTGACGTGGTCGCAGTCCGCGAGAAATCGCTG                                                                                                                                                                 >  2:1574403/1‑150                                   TTCCGAGTCCCGTCAGCTGGTTTCGCACAAAGCGATCAGCGTCAACGGTAAGACTGTAAACATTCCATCCTACCAAGTTCGTCCGGGTGACGTGGTCGCAGTCCGCGAGAAATCGCT                                                                                                                                                                  <  1:1503004/117‑1                                   TTCCGAGTCCCGTCAGCTGGTTTCGCACAAAGCGATCAGCGTCAACGGTAAGACTGTAAACATTCCATCCTACCAAGTTCGTCCGGGTGACGTGGTCGCAGTCCGCGAGAAATCGCT                                                                                                                                                                  >  2:1503004/1‑117                                      CGAGTCCCGTCAGCTGGTTTCGCACAAAGCGATCAGCGTCAACGGTAAGACTGTAAACATTCCATCCTACCAAGTTCGTCCGGGTGACGTGGTCGCAGTCCGCGAGAAATCGCTGG‑‑‑‑‑‑‑GCGCACAGTTCAAGGGCTTGAACAATGCGCAACT                                                                                                                       >  2:1607147/1‑150                                                CAGCTGGTTTCGCACAAAGCGATCAGCGTCAACGGTAAGACTGTAAACATTCCATCCTACCAAGTTCGTCCGGGTGACGTGGTCGCAGTCCGCGAGAAATCGCTGG‑‑‑‑‑‑‑GCGCACAGTTCAAGGGCTTGAACAATGCGCAACTGGCCCAGCGA                                                                                                             <  1:1607147/150‑1                                                    TGGTTTCGCACAAAGCGATCAGCGTCAACGGTAAGACTGTAAACATTCCATCCTACCAAGTTCGTCCGGGTGACGTGGTCGCAGTCCGCGAGAAATCGCTGG‑‑‑‑‑‑‑GCGCACAGTTCAAGGGCTTGAACAATGCGCAACTGGCCCAGCGATTTC                                                                                                         <  2:562517/150‑1                                                                                                    CATCCTACCAAGTTCGTCCGGGTGACGTGGTCGCAGTCCGCGAGAAATCGCTGGGCCAGTTGCGCACAGTTCAAGGGCTTGAACAATGCGCAACTGGCCCAGCGATTTCTCG                                                                                                      >  1:814572/1‑112                                                                                                    CATCCTACCAAGTTCGTCCGGGTGACGTGGTCGCAGTCCGCGAGAAATCGCTGGGCCAGTTGCGCACAGTTCAAGGGCTTGAACAATGCGCAACTGGCCCAGCGATTTCTCG                                                                                                      <  2:814572/112‑1                                                                                                                                                     GCTGG‑‑‑‑‑‑‑GCGCACAGTTCAAGGGCTTGAACAATGCGCAACTGGCCCAGCGATTTCTCGCGGACTGCGACCACGTCACCCGGACGAACTTGGTAGGATGGAATGTTTACAGTCTTACCGTTGACGCTGATCGCTTTGTGCGAAACCAGCTGAC        >  2:183509/1‑150                                                                                                                                                                  CGCACAGTTCAAGGGCTTGAACAATGCGCAACTGGCCCAGCGATTTCTCGCGGACTGCGACCACGTCACCCGGACGAACTTGGTAGGATGGAATGTTTACAGTCTTACCGTTGACGCTGATCGCTTTGTGCGAAACCAGCTGACGGGACT  >  2:723834/1‑150                                                                                                                                                                                                                                                                                                                         ACGTCGTTTACCGTATGGGCTTCGGCTCGACTCGTTCCGAGTCCCGTCAGCTGGTTTCGCACAAAGCGATCAGCGTCAACGGTAAGACTGTAAACATTCCATCCTACCAAGTTCGTCCGGGTGACGTGGTCGCAGTCCGCGAGAAATCGCTGG‑‑‑‑‑‑‑GC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/562576‑562730 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgg‑‑‑‑‑‑‑gcGCACAGTTCAAGGGCTTGAACAATGCGCAACTGGCCCAGCGATTTCTCGCGGACTGCGACCACGTCACCCGGACGAACTTGGTAGGATGGAATGTTTACAGTCTTACCGTTGACGCTGATCGCTTTGTGCGAAACCAGCTGACGGGACT  <  NC_002947/562763‑562615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.