| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 669469 = | 77 (1.050) | 6 (0.090) | 6/238 | NT | 7.5% | coding (908/2355 nt) | pbpC | peptidoglycan glycosyltransferase |
| ? | NC_002947 | 669496 = | 75 (1.070) | coding (935/2355 nt) | pbpC | peptidoglycan glycosyltransferase | |||||
GTAAAGAAACGGCTTGAGGGTGGAGCCGGGCGAACGTAACGAGCGCACCATGTCGACATGGCCAAAGCGGCGCTCATCAGACAAATCTATCGAGCCCAGGTACGCGCGCACCGCCATGCTCTGCGCCTCGACCACCAGAATGGCGGCCGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/669620‑669469‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagg‑‑CGC‑AGAGCATGGCGGTGCGCGCGTACCTGGGCTCGATAGATTTGTCTGATGAGCGCCGCTTTGGCCATGTCGACATGGTGCGCTCGTTACGTTCGCCCGGCTCCACCCTCAAGCCGTTTCTTTACGGCATGGCGCTGGACGATGGCC > NC_002947/669496‑669642 GTAAAGAAACGGCTTGAGGGTGGAGCCGGGCGAACGTAACGAGCGCACCATGTCGACATGGCCAAAGCGGCGCTCATCAGACAAATCTATCGAGCCCAGGTACGGGCGCACCGCCATGCTCTGCGCCTCGACCACCCAAATTGCGGCCGA > 2:602080/1‑150GTAAAGAAACGGCTTGAGGGTGGAGCCGGGCGAACGTAACGAGCGCACCATGTCGACATGGCCAAAGCGGCGCTCATCAGACAAATCTATCGAGCCCAGGTACGCGCGCACCGCCATGCTCTGCGCCTCGACCACCAGAATGGCGGCCGA < 2:34123/150‑1GTAAAGAAACGGCTTGAGGGTGGAGCCGGGCGAACGTAACGAGCGCACCATGTCGACATGGCCAAAGCGGCGCTCATCAGACAAATCTATCGAGCCCAGGTACGCGCGCACCGCCATGCTCTGCGCCTCGACCACCAGAATGGCGGCCGA > 2:538445/1‑150 GCGCACCGCCATGCTCTGCGCCTCGACCACCAGAATGGCGGCCGAGGTACGCTCCGGCA‑‑GCCGTGCGCGCGTACCTGGGCTCGATAGATTTGTCTGATGAGCGCCGCTTTGGCCATGTCGACATGGTGCGCTCGTTACGTTCGCCCGGCT > 2:1842538/1‑150 ATGCTCTGCGCCTCGACCACCAGAATGGCGGCCGAGGTACGCTCCGGCA‑‑GCCGTGCGCGCGTACCTGGGCTCGATAGATTTGTCTGATGAGCGCCGCTTTGGCCATGTCGACATGGTGCGCTCGTTACGTTCGCCCGGCTCCACCCTCAA < 1:1842538/150‑1 GCCTCGACCACCAGAATGGCGGCCGAGG‑‑CGC‑AGAGCATGGCGGTGCGCGCGTACCTGGGCTCGATAGATTTGTCT > 1:1878369/1‑75 GCCTCGACCACCAGAATGGCGGCCGAGG‑‑CGC‑AGAGCATGGCGGTGCGCGCGTACCTGGGCTCGATAGATGTGTCT < 2:1878369/75‑1 TCGACCACCAGAATGGCGGCCGAGG‑‑CGC‑AGAGCATGGCGGTGCGCGCGTACCTGGGCTCGATAGATTTGTCTGATGAGCGCCGCTTTGGCCATGTC < 1:1444315/96‑1 TCGACCACCAGAATGGCGGCCGAGG‑‑CGC‑AGAGCATGGCGGTGCGCGCGTACCTGGGCTCGATAGATTTGTCTGATGAGCGCCGCTTTGGCCATGTC > 2:1444315/1‑96 GAGG‑‑CGC‑AGAGCATGGCGGTGCGCGCGTACCTGGGCTCGATAGATTTGTCTGATGAGCGCCGCTTTGGCCATGTCGACATGGTGCGCTCGTTACGTTCGCCCGGCTCCACCCTCAAGCCGTTTCTTTACGGCATGGCGCTGGACGATGGC > 2:828398/1‑150 AGG‑‑CGC‑AGAGCATGGCGGTGCGCGCGTACCTGGGCTCGATAGATTTGTCTGATGAGCGCCGCTTTGGCCATGTCGACATGGTGCGCTCGTTACGTTCGCCCGGCTCCACCCTCAAGCCGTTTCTTTACGGCATGGCGCTGGACGATGGCC < 2:1257429/150‑1 GTAAAGAAACGGCTTGAGGGTGGAGCCGGGCGAACGTAACGAGCGCACCATGTCGACATGGCCAAAGCGGCGCTCATCAGACAAATCTATCGAGCCCAGGTACGCGCGCACCGCCATGCTCTGCGCCTCGACCACCAGAATGGCGGCCGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/669620‑669469‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagg‑‑CGC‑AGAGCATGGCGGTGCGCGCGTACCTGGGCTCGATAGATTTGTCTGATGAGCGCCGCTTTGGCCATGTCGACATGGTGCGCTCGTTACGTTCGCCCGGCTCCACCCTCAAGCCGTTTCTTTACGGCATGGCGCTGGACGATGGCC > NC_002947/669496‑669642 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |