| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1223246 | 55 (0.750) | 6 (0.090) | 7/220 | NT | 10.4% | intergenic (‑31/+35) | PP_1067/gltL | sensor histidine kinase/glutamate/aspartate ABC transporter ATP binding protein |
| ? | NC_002947 | = 1223258 | 55 (0.850) | intergenic (‑43/+23) | PP_1067/gltL | sensor histidine kinase/glutamate/aspartate ABC transporter ATP binding protein | |||||
ATCAGGTAGCCAGCCATTCCCAGGCCGACCATCAGCAGGATGATCAGTGGTGGTAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1223085‑1223246‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcttccgctgccAGGGACCCACCAGGCAGCGGAAGCTGGTCGTAACAAGGCCACTGTGATGAAATGCGATCCCTCGCTACTTCGCCCTGCCAAGCCTGCCGTGAATTCCCGCCTGATCCGTCAATTGCTGTTACCACCACTGATCATC < NC_002947/1223258‑1223123 ATCAGGTAGCCAGTCATTCCCAGGCCGACCATCAGCAGGATGATCAGTGGTGGTAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCA < 1:883791/150‑1 GTAGCCAGCCATTCCCAGGCCGACCATCAGCAGGATGATCAGTGGTGGTAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTC > 2:1447102/1‑150 GCCATTCCCAGGCCGACCATCAGCAGGATGATCAGTGGTGGTAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCC > 2:740435/1‑150 GCCATTCCCAGGCCGACCATCAGCAGGATGATCAGTGGTGGTAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCC > 1:1310317/1‑150 CCAGGCCGACCATCAGCAGGATGATCAGTGGTGGTAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCAGGGACC > 1:352886/1‑150 GCAGGATGATCAGTGGTGGTAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCAGGGACCCACCAGGCAGCGGAA > 2:627806/1‑150 CAGGATGATCAGTGGTGGTAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCAGGGACCCACCAGGCAGCGGAAG < 1:627806/150‑1 GCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGC < 1:1757698/87‑1 GCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGC > 2:1757698/1‑87 TCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCAGGGACCCACCAGGCAGC < 2:1104533/63‑1 TCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCCAGGGACCCACCAGGCAGC > 1:1104533/1‑63 TTGTTACGACCAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGGTCGTAACAAGGCCACTGTGATGAAATGCGATCCCTCGCTACTTCGCCCTGCCAAGCCTGCCGTGAATTCCCGCCTGATCCGTCAATTGCTGTTACCACC > 2:352886/1‑150 CAGCTTCCGCTGCCTGGTGGGTCCCTGGCAGCGGAAGCTGGTCGTAACAAGGCCACTGTGATGAAATGCGATCCCTCGCTACTTCGCCCTGCCAAGCCTGCCGTGAATTCCCGCCTGATCCGTCAATTGCTGTTACCACCACTGATCATC > 1:219926/1‑150 TGCCAGGGACCCACCAGGCAGCGGAAGCTGGTCGTAACAAGGCCACTGTGATGAAATGCGATCCCTCGCTACTTCGCCCTGCCAAGCCTGCCGTGAATTCCCGCCTGATCCGTCAATTGCTGTTACCA < 1:1423306/128‑1 TGCCAGGGACCCACCAGGCAGCGGAAGCTGGTCGTAACAAGGCCACTGTGATGAAATGCGATCCCTCGCTACTTCGCCCTGCCAAGCCTGCCGTGAATTCCCGCCTGATCCGTCAATTGCTGTTACCA > 2:1423306/1‑128 TGCCAGGGACCCACCAGGCAGCGGAAGCTGGTCGTAACAAGGCCACTGTGA > 1:305896/1‑51 TGCCAGGGACCCACCAGGCAGCGGAAGCTGGTCGTAACAAGGCCACTGTGA < 2:305896/51‑1 ATCAGGTAGCCAGCCATTCCCAGGCCGACCATCAGCAGGATGATCAGTGGTGGTAACAGCAATTGACGGATCAGGCGGGAATTCACGGCAGGCTTGGCAGGGCGAAGTAGCGAGGGATCGCATTTCATCACAGTGGCCTTGTTACGACCAGCTTCCGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1223085‑1223246‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcttccgctgccAGGGACCCACCAGGCAGCGGAAGCTGGTCGTAACAAGGCCACTGTGATGAAATGCGATCCCTCGCTACTTCGCCCTGCCAAGCCTGCCGTGAATTCCCGCCTGATCCGTCAATTGCTGTTACCACCACTGATCATC < NC_002947/1223258‑1223123 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |