| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1362765 = | 64 (0.880) | 5 (0.070) | 4/244 | NT | 6.8% | coding (1149/1347 nt) | phoQ | sensor protein |
| ? | NC_002947 | 1362794 = | 75 (1.040) | coding (1178/1347 nt) | phoQ | sensor protein | |||||
GCTCAGCTCGGCGTCATAGCTGTCGACGATATCCTTGACCACTGCCAAGCCGATGCCCTGCCCCGGGTGCTGGCTGTCCAGCCGCTCCCCACGCTCCAGAATGCGTTCACGCTGGTCGACGGGCACGCCCG‑GCCCGTCGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1362906‑1362765‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccAGCGTGAACGCATTCTGGAGCGTGGGGAGCGGCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGG > NC_002947/1362794‑1362942 GCTCAGCTCGGCGTCATAGCTGTCGACGATATCCTTGACCACTGCCAAGCCGATGCCCTGCCCCGGGTGCTGGCTGTCCAGCCGCTCCCCACGCTCCAGAATGCGTTCACGCTGGACGACGGGC‑CGGGCGTGCCCGTCGACCAGCGTGAA < 2:1715106/150‑1 CTCAGCTCGGCGTCATAGCTGTCGACGATATCCTTGACCACTGCCAAGCCGATGCCCTGCCCCGGGTGCTGGCTGTCCAGCCGCTCCCCACGCTCCAGAATGCGTTCACGCTGGTCGACGGGC‑CGGGCGTGCCCGTCGACCAGCGTGAAC < 2:1017552/150‑1 GCTGTCGACGATATCCTTGACCACTGCCAAGCCGATGCCCTGCCCCGGGTGCTGGCTGTCCAGCCGCTCCCCACGCTCCAGAATGCGTTCACGCTGGACGACGGGCCGGGCGT‑GCCCGTCGACCAGCGTGAACGCATTCTGGAGCGTGGG < 2:1376508/150‑1 TTGACCACTGCCAAGCCGATGCCCTGCCCCGGGTGCTGGCTGTCCAGCCGCTCCCCACGCTCCAGAATGCGTTCACGCTGGACGACGGGCCGGGCGT‑GCCCGTCGACCAGCGTGAAC > 2:1919537/1‑117 TTGACCACTGCCAAGCCGATGCCCTGCCCCGGGTGCTGGCTGTCCAGCCGCTCCCCACGCTCCAGAATGCGTTCACGCTGGACGACGGGC‑CGGGCGTGCCCGTCGACCAGCGTGAAC < 1:1919537/117‑1 TCCAGCGTGAACGCATTCTGGAGCGTGGGGAGCGGCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCA < 1:1376508/150‑1 TCCAGCGTGAACGCATTCTGGAGCGTGGGGAGCGGCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCA < 1:1715106/150‑1 CCAGCGTGAACGCATTCTGGAGCGTGGGTAGCGGCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAG < 1:17409/150‑1 CCAGCGTGAACGCATTCTGGAGCGTGGGGAGCGGCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGTCAGGGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAG < 2:647592/150‑1 CAGCGTGAACGCATTCTGGAGCGTGGGGAGCGGCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGG > 1:331393/1‑150 CAGCGTGAACGCATTCTGGAGCGTGGGGAGCGGCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGC < 1:296323/109‑1 CAGCGTGAACGCATTCTGGAGCGTGGGGAGCGGCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGC > 2:296323/1‑109 GCTCAGCTCGGCGTCATAGCTGTCGACGATATCCTTGACCACTGCCAAGCCGATGCCCTGCCCCGGGTGCTGGCTGTCCAGCCGCTCCCCACGCTCCAGAATGCGTTCACGCTGGTCGACGGGCACGCCCG‑GCCCGTCGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1362906‑1362765‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccAGCGTGAACGCATTCTGGAGCGTGGGGAGCGGCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGG > NC_002947/1362794‑1362942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |