New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1590942 =	47 (0.640)	4 (0.060)	4/240	NT	8.2%	intergenic (+51/+73)	PP_1394/PP_1395	acetolactate synthase large subunit/AraC family transcriptional regulator
	?	NC_002947	1590962 =	44 (0.620)					intergenic (+71/+53)	PP_1394/PP_1395	acetolactate synthase large subunit/AraC family transcriptional regulator

TTCAGCCGTGAATACAGCCGGCTTTACGGCGCGCCGCCGATTCGCGATGTGGCTCGGTTGCGGGCTACTGCGGTCTGAAGCTCAACATTCTCCTGCACCGGCGCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTTGCA‑CAGATGCGAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1591092‑1590942 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaCCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGA  >  NC_002947/1590962‑1591039                                                                                                                                                                                                                                        TTCAGCCGTGAATACAGCCGGCTTTACGGCGCGCCGCCGATTCGCGATGTGGCTCGGTTGCGGGCTACTGCGGTCTGAAGCTCAACATTCTCCTGCACCGGCGCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTTGCA‑CAGATGCGAAA                                                                                 >  2:1311091/1‑150  TCAGCCGTGAATACAGCCGGCTTTACGGCGCGCCGCCGATTCGCGATGTGGCTCGGTTGCGGGCTACTGCGGTCTGAAGCTCAACATTCTCCTGCACCGGCGCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTTGCA‑CAGATGCGAAAA                                                                                <  2:550965/150‑1                  CCGGCTTTACGGCGCGCCGCCGATTCGCGATGTGGCTCGGTTGCGGGCTACTGCGGTCTGAAGCTCAACATTCTCCTGCACCGGCGCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTT                                                                >  1:306261/1‑150                      CTTTACGGCGCGCCGCCGATTCGCGATGTGGCTCGGTTGCGGGCTACTGCGGTCTGAAGCTCAACATTCTCCTGCACCGGCGCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACC                                                            <  2:306261/150‑1                                                                                                                              TACAGGTTTTTGCA‑CAGATGCGAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGA  >  1:1266118/1‑104                                                                                                                              TACAGGTTTTTGCA‑CAGATGCGAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGA  <  2:1266118/104‑1                                                                                                                                                                                                                                        TTCAGCCGTGAATACAGCCGGCTTTACGGCGCGCCGCCGATTCGCGATGTGGCTCGGTTGCGGGCTACTGCGGTCTGAAGCTCAACATTCTCCTGCACCGGCGCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTTGCA‑CAGATGCGAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1591092‑1590942 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaCCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGA  >  NC_002947/1590962‑1591039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.