| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1590942 = | 47 (0.640) | 4 (0.060) | 4/240 | NT | 8.2% | intergenic (+51/+73) | PP_1394/PP_1395 | acetolactate synthase large subunit/AraC family transcriptional regulator |
| ? | NC_002947 | 1590962 = | 44 (0.620) | intergenic (+71/+53) | PP_1394/PP_1395 | acetolactate synthase large subunit/AraC family transcriptional regulator | |||||
GCCCAATTGCAGGCCGCGCTCGGGCAAGCGGTGGAGCGCAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCCACATCGCGAATCGGCGGCGCGCCGTAAAGCCGGCTGTATTCACGGCTGA > NC_002947/1590793‑1591091 | gCCCAATTGCAGGCCGCGCTCGGGCAAGCGGTGGAGCGCAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAAt < 1:273689/150‑1 (MQ=255)gCCCAATTGCAGGCCGCGCTCGGGCAAGCGGTGGAGCGCAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCACGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAAt > 2:785618/1‑150 (MQ=255) ccAATTGCAGGCCGCGCTCGGGCAAGCGGTGGAGCGCAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAAttt > 1:1231853/1‑150 (MQ=255) ggCCGCGCTCGGGCAAGCGGTGGAGCGCAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCtg > 2:1282574/1‑150 (MQ=255) ggCCGCGCTCGGGCAAGCGGTGGAGCGCAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCACGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCtg < 1:785618/150‑1 (MQ=255) ccGCGCTCGGGCAAGCGGTGGAGCGCAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCtg‑tg < 2:1231853/150‑1 (MQ=255) cgcgCTCGGGCAAGCGGTGGAGCGCAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGACCGCTGGGTAAGGTCACACGTTTGAACTCCAGTCACTCTGCTTCTCGCGCCTGCAGGCAGAGCGCAATTTTCGCATCTG‑TGc > 1:227853/1‑150 (MQ=255) tCGGGCAAGCGGTGGAGCGCAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCaaaaa > 1:679064/1‑150 (MQ=255) gCAAGCGGTGGAGCGCAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTg > 1:180280/1‑150 (MQ=255) cAAGCGGTGGAGCGCAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGt > 2:1051249/1‑150 (MQ=255) gAGCGCAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCggg < 1:1417102/150‑1 (MQ=255) gAGCGCAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCggg > 2:1025032/1‑150 (MQ=255) aGCGCACGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGt < 1:1051249/150‑1 (MQ=255) gcAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTa > 1:1810143/1‑150 (MQ=255) gcAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTa > 1:1503332/1‑150 (MQ=255) gCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGa > 2:1801050/1‑150 (MQ=255) cGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAGATGGGTAGGAGCGGGTTTACCCGCGaaa < 1:1718151/150‑1 (MQ=255) cGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTa > 2:1098724/1‑141 (MQ=255) cGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTa < 1:1098724/141‑1 (MQ=255) ttGATTCAGGTGGACCAGAATCAGTGGCAGGCCACGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGcc < 2:1045529/150‑1 (MQ=255) cAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCa < 1:832746/150‑1 (MQ=255) aGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAACGGCAGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAg > 1:592980/1‑150 (MQ=255) gACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGaa < 2:227853/150‑1 (MQ=255) aGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGtt < 1:1801050/150‑1 (MQ=255) aGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGtt > 2:768401/1‑150 (MQ=255) gAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCTGTGCAGGAGAATGTTg < 1:1025032/150‑1 (MQ=255) aaTCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGa < 2:1263694/150‑1 (MQ=255) aTCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAg < 2:1503332/150‑1 (MQ=255) tcggttgcgggctactgcggtctgaagctcaacattctcctgcaccggcgctttcgcgggtaaacccgctcctacaggTTTTCGCATCTG‑TGCAAAAACCTGTa > 1:1266118‑M1/79‑104 (MQ=255) tcggttgcgggctactgcggtctgaagctcaacattctcctgcaccggcgctttcgcgggtaaacccgctcctacaggTTTTCGCATCTG‑TGCAAAAACCTGTa < 2:1266118‑M1/26‑1 (MQ=255) tCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGc < 1:1481206/150‑1 (MQ=255) tGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCa > 1:1487852/1‑150 (MQ=255) ccGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCa < 2:1849146/150‑1 (MQ=255) ttGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCg > 1:1227482/1‑150 (MQ=255) gggTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCa > 1:1311091/1‑150 (MQ=255) ttGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAAcc > 1:1579266/1‑150 (MQ=255) aTTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCcac > 2:1482753/1‑150 (MQ=255) ttGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGtt > 1:1297939/1‑114 (MQ=255) ttGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGtt < 2:1297939/114‑1 (MQ=255) ttGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCcaca > 1:977200/1‑150 (MQ=255) ccTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCATACCGCAGTAGCCCGCAACCGAGCCACATCGCGAATc > 2:90896/1‑150 (MQ=255) cTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCCGGAGAATTTTGATCTTCAGACCGCAGTAGCCCTCAACCGAGCCACATCGCGAAtag > 2:1288098/1‑148 (MQ=255) ccTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCCACATCGCGAATCGGCGgcgcgc < 1:1319125/150‑1 (MQ=255) ccTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCCACATCGCGAATCGGCGgcgcgc < 2:1227482/150‑1 (MQ=255) ctctCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGa < 1:355348/104‑1 (MQ=255) ctctCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGa > 2:355348/1‑104 (MQ=255) cgcgCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGGGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCCACATCGCGAATCGGCGGCGCGCCGTaa < 2:1054221/150‑1 (MQ=255) ggtaaacccgctcctacaggTTTTTGCA‑CAGATGCGAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCCACATCGCGAATCGGCGGCGCGCCGTAAAg < 2:306261‑M1/130‑1 (MQ=255) tGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCCACATCGCGAATCGGCGGCGCGCCGTAAAGCCgg < 2:1579266/150‑1 (MQ=255) aacccgctcctacaggTTTTTGCA‑CAGATGCGAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCCACATCGCGAATCGGCGGCGCGCCGTAAAGCCgg > 1:306261‑M1/17‑150 (MQ=255) agCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCCACACCGCGAATCGGCGGCGCGCCGTACCGCCGGCTggctt < 2:1483914/150‑5 (MQ=255) gcgcgcAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCCACATCGCGAATCGGCGGCGCGCCGTAAAGCCGGCTGTATTc < 1:1282574/150‑1 (MQ=255) cgcgcAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCCACATCGCGAATCGGCGGCGCGCCGTAAAGCCGGCTGTATTCa < 1:1482753/150‑1 (MQ=255) cgcgcAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCCACATCGCGAATCGGCGGCGCGCCGTAAAGCCGGCTGTATTCa > 1:1128102/1‑150 (MQ=255) aaTTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCCACATCGCGAATCGGCGGCGCGCCGTAAAGCCGGCTGTATTCACGGCt > 2:472824/1‑150 (MQ=255) aaTTTTAGCATCTC‑TGTCAAAACCTGCAGGAGGCTGTTTCCCAGCAAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCCACATCGCGAATCGGCGGCGCGCCGTAAAGCCGGCTGTATTCACGGCt < 2:592980/150‑1 (MQ=255) TTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCCACATCGCGAATCGGCGGCGCGCCGTAAAGCCGGCTGTATTCACGGCTGa < 2:550965‑M1/150‑1 (MQ=255) | GCCCAATTGCAGGCCGCGCTCGGGCAAGCGGTGGAGCGCAAGGGGCCGACCTTGATTCAGGTGGACCAGAATCAGTGGCAGGCCGCGGTGTTGGGTTGAAGCATTGCGATTGCCTGTTTCGGCCTCTCGCGCCTGCAGGCAGCGCGCAATTTTCGCATCTG‑TGCAAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGCGCCGGTGCAGGAGAATGTTGAGCTTCAGACCGCAGTAGCCCGCAACCGAGCCACATCGCGAATCGGCGGCGCGCCGTAAAGCCGGCTGTATTCACGGCTGA > NC_002947/1590793‑1591091 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |