New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1602098 =	79 (1.080)	4 (0.060) +TGCACCGCAGTGCTTGC	4/214	NT	6.3%	intergenic (+69/‑98)	PP_1404/PP_5469	hypothetical protein/SAM‑dependent methyltransferase
	?	NC_002947	= 5594170	60 (0.820)					intergenic (‑66/+79)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase

GTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1602140‑1602098 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCGGGCAAGCCCGCTCCCACAGGGT‑‑GGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCCCCATCCAGCAGCGCATTTTCGGTGCTCGCGACCTGTTTTCACT  <  NC_002947/5594170‑5594022                                            |||||||||||||||||                                                                                                                                                        GTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGT‑‑GGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCT                                                             >  2:678829/1‑150     GAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACC                                                                          <  1:106009/134‑1     GAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTG‑CTGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACC                                                                          >  2:106009/1‑134                 CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGT‑‑GGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCC                                             >  2:829554/1‑150                                                            CTTCGCGGGCAAGCCCGCTCCCACAGGGT‑‑GGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCCCCATCCAGCAGCTCATTTTCGGTGCTCGCGACCTGTTTTCACT  <  1:678829/150‑1                                            |||||||||||||||||                                                                                                                                                        GTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1602140‑1602098 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCGGGCAAGCCCGCTCCCACAGGGT‑‑GGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCCCCATCCAGCAGCGCATTTTCGGTGCTCGCGACCTGTTTTCACT  <  NC_002947/5594170‑5594022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.